Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00564 ATGGAACTCTGTGAACATGATCATTTTTTGGAAGAATTACTGGCTATGAGAAGGGAAACTTGGGACACCATCCCATCAGAACCAAACCAACTCTTCTCTAATAGCTGGGGTTTTGATTGTTTTGATCAAAACTCTCTGGCTTATCTTCCAAACTCTTCAACCTTTCAAGAGATTCCTCAGAGTTACCACAACAACAACAATTATGCCTTTAATGAAATCTACAGTTCGTTACTTGATGAATTCTCTGCTTATCCCCAGAATGTGGATTCATCTTCTTCATCCTATAACGTTCTTGATACTCCAGTTCTGGGTCAAGAAGATTACCCATTGTCCATGATGGAAGATTTGGAGGATCCTGGTTTCCTTGGGGATGAACTTCAGAGTTTGAACCTGCAAACACCATGCAAGATAGAGCCAAGCCAATCCCCAGAAATGCCAGTTTTCAACATGGGCGATGCTTCTTTGGAGAGAAAGAATCGATCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGGAGGAGAAAGAGGTTAAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATTAGTAAGATGGACAGAACATCTATCCTTGGAGACACTATAGATTACATGAAAGAACTCCTTGAGAAGATCAATAAATTGCAACAAGAATTAGAGGTGGATTCAAACATGGGAGGCATTTTCAAGGATGAAAAGCAAAATGAACTCTTGGTGAGGAATACACCCAAGTTTGAAGTGAAGAGGAAGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCAATCTACAATCAACACCTTGGAAGCATTTGGTCTTGAGATTGAACAGTGTGTCATTAGTTGTTTCAATGATTTCTCTGTCCAGGCTTCTTGCTCAGAGGAACAGGAAATGGAGCAGAGGAGAGTGCTGAGTTGTGAAGATATAAAGCAAGCTTTATTTAGAAGCGCAGGGTATGGAGGAAGATGTTCGTAG 1014 0.4112 MELCEHDHFLEELLAMRRETWDTIPSEPNQLFSNSWGFDCFDQNSLAYLPNSSTFQEIPQSYHNNNNYAFNEIYSSLLDEFSAYPQNVDSSSSSYNVLDTPVLGQEDYPLSMMEDLEDPGFLGDELQSLNLQTPCKIEPSQSPEMPVFNMGDASLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEVDSNMGGIFKDEKQNELLVRNTPKFEVKRKNEDTQIEICCAGKPGLLQSTINTLEAFGLEIEQCVISCFNDFSVQASCSEEQEMEQRRVLSCEDIKQALFRSAGYGGRCS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00564 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 331 - -
Accr4g00564 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 228 IPR036638 GO:0046983
Accr4g00564 337 Coils Coil 205 232 - -
Accr4g00564 337 Gene3D - 155 230 IPR036638 GO:0046983
Accr4g00564 337 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Accr4g00564 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Accr4g00564 337 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00564 Accr-Chr4 5568575 5569869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00564 97 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.724 4.58e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr4g00564 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00564 - - gmx:100814388 477.248