Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00556 ATGTCGACTCCAGGGGTCCGATGTCACCTTCATGGTCGTCATGTGGTGATGGATAATGGCATACTCCAAGTAACCTTATCAAACCCTGAGGGCATTGTTACTGGGCTTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAAAGATACTAATCGAGGGTACTGGGACCTTGTCTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTCAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACACGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCATTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACATGTTTAATTACATGGCTATAGAAGACAATAGGCAAAGGACTATGCCTCTTCCAGATGATCGGTTACCAGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATCTATTAACATGAATAATCGAGTCCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTAACCTCACACGTTGGACCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCTAAATTTCGAGGCGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTCTTTATTTATCTTAACTCCGGATCAATTGGTGATGACCCTCTTTGGCTGTGGGAGGATGCAAAAATACAGATGATGACTGAAGTCCAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAACGTTAGTGGTAGGCTGCTTGTGTTAGACAGGTGCGTCTGCACAGATTTGATGCCGGCAAACGGTGCTTATGTTGGTCTTGCCCTGCCAGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAATATGGATTTTTTACCATTAAGAATGTACGTCCAGGGGACTACAATCTTTATGCTTGGATCCCTGGTTTTGTTGGAGACTACAGATTTGATGATCTGATGAAGATAGATTCAGGTTCTTATATTGAACTGGGTGACATTGTTTATGAGCCCCCAAGGGATGGACCCACATTGTGGGAAATAGGCATACCCAATAGATCAGCTGCAGAATTTTATGTTCCCGATCCAAATCCGAATCTCGTTAATAGGCTCTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGACTGTGGGACAGGTATGCAGAACTGTATCCTGATGCTGATTTGGTTTACACAGTCGGTGCTAGTGATTATTCCAAAGACTGGTTTTTCGCCCAGGTTCCCAGAAAGAAAGAGGACAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAGTAATGTTGCTCAGAGAAGTATATATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCCGAAATGCAGATTCGAATAAATGATCCAAATGCAAAGCGCCCTCTATTTACCACTGGTTTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGGCTTTATAGGCTGTACAATGTGAATGTGCCAGGTGCTGCTCTTGTCAATGGCATAAACACACTATTTTTAACGCAGCCAAGATGCCAAAGCCCTTTTCAGGGGATCATGTATGATTATATTCGTTTTGAAGGTCCGGACTTGTTTTTAGAGAATAACTTTAATATCCTTTAA 1929 0.4246 MSTPGVRCHLHGRHVVMDNGILQVTLSNPEGIVTGLRYNGVDNLLEVLNKDTNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDMFNYMAIEDNRQRTMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSSINMNNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGSIGDDPLWLWEDAKIQMMTEVQSWPYFFPASEDFLKSDQRGNVSGRLLVLDRCVCTDLMPANGAYVGLALPGEAGSWQRECKDYQFWTRADEYGFFTIKNVRPGDYNLYAWIPGFVGDYRFDDLMKIDSGSYIELGDIVYEPPRDGPTLWEIGIPNRSAAEFYVPDPNPNLVNRLFVNHPDRFRQYGLWDRYAELYPDADLVYTVGASDYSKDWFFAQVPRKKEDNTLQGTTWQIKFELSNVAQRSIYKLRVAIASATLAEMQIRINDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYNVNVPGAALVNGINTLFLTQPRCQSPFQGIMYDYIRFEGPDLFLENNFNIL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00556 642 CDD RGL4_N 10 293 - -
Accr4g00556 642 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Accr4g00556 642 FunFam Rhamnogalacturonate lyase B 328 427 - -
Accr4g00556 642 Gene3D - 438 629 - -
Accr4g00556 642 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Accr4g00556 642 Gene3D - 8 305 IPR014718 GO:0030246
Accr4g00556 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 631 - -
Accr4g00556 642 SUPERFAMILY Starch-binding domain-like 330 423 IPR013784 GO:0030246
Accr4g00556 642 Pfam Rhamnogalacturonate lyase family 13 200 IPR010325 -
Accr4g00556 642 Pfam Polysaccharide lyase family 4, domain III 440 627 IPR029411 -
Accr4g00556 642 CDD RGL4_C 442 629 - -
Accr4g00556 642 Gene3D - 328 413 - -
Accr4g00556 642 CDD RGL4_M 331 430 IPR029413 -
Accr4g00556 642 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00556 Accr-Chr4 5379610 5384611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00556 1 631 Polysaccharide Lyase AT1G09910 70.523 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00556 K18195 - gmx:100814185 1155.97