Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00554 ATGTCGTTAACAGGAGTGCAACTGCTTATTGAAGATACTCATGTGGTGGTTGAGAATGGCATAGTAAAGGTAACATTGTCAAATCCTGAGGGAATAGTGACAGGAATAGAATATAATGGTGTCGACAACTTGCTGGAATATCTGAACGAGGAATCTAATAGAGGGTACTGGGACCTTGTGTGGAGCTCACCGACAAGTCCCGGAACCAAAGGAATGTTTGATGTGATAAAGGGAACAGAGTTCCAAGTGATTGTAGAAAATGAAGAACAAGTTGAGTTATCCTTCACAAGAACGTGGGATGCCTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGCGTGGATGTTGTTCTGGCTTCTACACCTATGCTATTTACGAACACTTAGATGACTGGCCCGCCTTCGATATGGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCTGATAATAGACAAAGAAAGATGCCTCTTCCTCAAGACAGAGACTCCCCTAGAGGCCAAAAACTTGCCTATCCTGAGGCTGTTCTTCTGGTTAATCCTGTCGACCCTGAAATGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGCGACAACAAGGATAGCAGGGTGCATGGATGGATTTGCCCAGAGCCGGCGGTCGGATTCTGGCTAATAACTCCCAGCAACGAGTTCCGATCCGGTGGACCCGTCAAACAGAACCTAACTTCTCATGTGGGACCCACCACTCTTGCTGTGTTTCTAAGTGCTCATTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGCGAGGCATGGAAGAAGGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGAAGACAACCTATTTAATCAACTATGGGAAGACGCTAAACTTCAGATGCAGATAGAAGTTCAGAGTTGGCCCTACAATTTTCCTGCGTCACAAGATTACCTAAAGTGGGACGAACGTGGTAATGTCAATGGTAGGCTACTCGTCCGAGACAGGTATATTAGAGACGAAAATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCACCAGGAGAAGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGAAGGATATTTCTCCATCAGCAATATACGCCCTGGTGACTATAATTTTTACGCATGGGTCCCTGGTTTTATTGGGGATTATAGATATGATGAGGTTTTGAGCATAACTCCAGGCTGTTACATAGTCGTAGGTGATATTGTGTATGAACCTCCAAGAGATGGTCCAACTTTGTGGGAAATAGGCATCCCTGACCGTACAGCTGCTGATTTTTTTGTTCCTGATCCCAATCCCAAATATATCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGGCTATGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGTGACTACACCCAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCAAACTGGACAAAGCGAACAAGAGAGGTTCCTATAAACTGCGCATAGCTCTGGCATCAGCAACATTTTCTGAACTGCAGGTTAGAGTGAATGATCCAAAAGCAGCTCGTCCTGTGTTTTCGAGTGGGTTGATAGGGAGAGATAATTCCATTGCTAGGCATGGCATTCATGGGCTGTATTGGCTTTTCACCGTTGACATATCGGGTGCACGACTCGTTGAAGGAGATAATACCTTCTTTTTAACACAGTCAAGAGCCGGTGGCCCCTTTGTGGGCATTATGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTACTTCCAACGACGCCGACGGTATTTGA 1941 0.4395 MSLTGVQLLIEDTHVVVENGIVKVTLSNPEGIVTGIEYNGVDNLLEYLNEESNRGYWDLVWSSPTSPGTKGMFDVIKGTEFQVIVENEEQVELSFTRTWDASLEGKLVPLNIDKRFIMRGCCSGFYTYAIYEHLDDWPAFDMDETRIAFKLSREKFHYMAMADNRQRKMPLPQDRDSPRGQKLAYPEAVLLVNPVDPEMKGEVDDKYQYSCDNKDSRVHGWICPEPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNEDNLFNQLWEDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIRDENISAKGAYVGLAPPGEAGSWQRECKNYQFWAKADDEGYFSISNIRPGDYNFYAWVPGFIGDYRYDEVLSITPGCYIVVGDIVYEPPRDGPTLWEIGIPDRTAADFFVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTQDWFFAQVTRKKDDNTYQGTTWQIKFKLDKANKRGSYKLRIALASATFSELQVRVNDPKAARPVFSSGLIGRDNSIARHGIHGLYWLFTVDISGARLVEGDNTFFLTQSRAGGPFVGIMYDYIRLEGPPSSTSNDADGI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00554 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 636 - -
Accr4g00554 646 Pfam Polysaccharide lyase family 4, domain II 358 429 IPR029413 -
Accr4g00554 646 Gene3D - 442 633 - -
Accr4g00554 646 SUPERFAMILY Galactose mutarotase-like 12 306 IPR011013 GO:0003824|GO:0005975|GO:0030246
Accr4g00554 646 Gene3D - 7 314 IPR014718 GO:0030246
Accr4g00554 646 SUPERFAMILY Starch-binding domain-like 335 426 IPR013784 GO:0030246
Accr4g00554 646 SUPERFAMILY Galactose-binding domain-like 441 633 IPR008979 -
Accr4g00554 646 CDD RGL4_C 446 633 - -
Accr4g00554 646 FunFam Rhamnogalacturonate lyase B 332 431 - -
Accr4g00554 646 CDD RGL4_N 11 301 - -
Accr4g00554 646 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Accr4g00554 646 CDD RGL4_M 335 434 IPR029413 -
Accr4g00554 646 Gene3D - 334 424 - -
Accr4g00554 646 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00554 Accr-Chr4 5373068 5377174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00554 1 635 Polysaccharide Lyase AT1G09890 71.226 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00554 K18195 - gmx:100814721 1122.84