Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00553 ATGTTGATCCTCACCAACTGTTTCCTGTTCTTCTTGCTGATGCTGGTTTTGGTTCTGGGCTATGTCTCTTATCCAGGAGTACGATTGGAAATTCAAGATAAGCATATTGTGATGGATAATGGCATAGTCCAAGTCACCTTATCAAATCCCGGAGGATCAGTCACCGGAATCCAGTACAATGGAATTGACAATTTGCTTGAAGTCCAAAACATGGAATTTGACAGAGGTTACTGGGATGTTGTATGGAGCGAGGCTGGTAAAAATGGAACAAAGGGTACATTGGATAGGTTGGAAGCCACAAATTTTACAGTAATTGTTCAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAACGTGGCTGCCTTCCCTTGAGGGAAAGATTCCGCCCCTCAGTATCGATAAAAGATTTATAATGCTTCGTGGTTCATCGGGCTTCTACACTTATGCCATATACGAGCATTTGAAGGGATGGCCTGCCTTCAATCTTGACAATACTCGGATTGCATTTAAACTTCGGAAAGACAAGTTCCATTACATGGTTGTAGCAGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGGGTGGAAGGAAGAGGGCAAGTTCTAGCCTATCCTGAAGCTGTCCTCCTTGTCGATCCTGTTGAGCCTGAATTCAAAGGGGAGGTGGATGACAAATATCAGTACTCGTGCGAGAGTCGCAACAACAGGGTTCATGGCTGGATATGTATGGATCTTTCTGTTGGGTTCTGGCAAATTACGCCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATCACTTCTCACGTGGGCCCCACCATACTCTCTGTATTTCACAGTACGCATTATACAGGAGCAGATCTAGTAATGAAATTTAGGGCTGCAGAAGAATGGAAGAAAGTGTATGGGCCCATTTTTATATACCTTAATGCTTTGTCTAACGGAGAAAGCCCGGCCACGCTATGGGAAGACGCTAACCAGCAGACGGTTTATGAAATTGAAAGGTGGCCCTATGCATTTCCAGCTTCACAAGACTTTCCCTCATCTTACCAACGAGGCAAGGTTAAAGGGAGATTACTGGTACAAGATAGGTATGTCACTGATGGGTGTGTCCCAGCTGGTGGCGCTTACGTGGGATTAGCTGCAACTGGAGATGCAGGATCTTGGCAGAGAGAATACAAGGGTTATCAGTTTTGGACTATCACTGATGATAAAGGCTACTTCACAATCACTGACATACGGGCTGGGCAGTATAATCTTTACTCCTGGGTCAATGGGTTTATCGGCGATTATCGATGTGACAACGTCATTAACATAACCTCAGGTTGTGAAGTTGATGTGGGGGAACTTGTTTATGAGCCTCCAAGAGATGGCCCCACCTTGTGGGAAATAGGCATCCCTGATCGCACTGCAGCTGAATTCTGTATCCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAAACATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACTATAGGAACCAGTGACTACAAAAAAGATTGGTTTTTTGCTCAAGTTAATAGGAAGATAGATAACAACACATACCAAGAAACCACATGGCGAATTAATTTCAAGCTTGATGGTGTAAATACCAATGGAACCTACAAATTGCGATTGGCTCTGGCATCTGTGCACTCTGCTGAGCTGCAAGTTCGGGTGAATGACTCAGAAGCAAACCCACCTTTGTTCACAAGTGGAGTGATTGGGAAGGAGAACACAATAGCCAGACATGGAATTCATGGGCTATATTGGCTGTTCAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAATAATACCTTTTTCCTAAAGCAACCAAGAAACATAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCCTCTTCTCTAACTAGTAATATATGA 1989 0.4384 MLILTNCFLFFLLMLVLVLGYVSYPGVRLEIQDKHIVMDNGIVQVTLSNPGGSVTGIQYNGIDNLLEVQNMEFDRGYWDVVWSEAGKNGTKGTLDRLEATNFTVIVQNEEQLELSFTRTWLPSLEGKIPPLSIDKRFIMLRGSSGFYTYAIYEHLKGWPAFNLDNTRIAFKLRKDKFHYMVVADNRQRFMPLPDDRVEGRGQVLAYPEAVLLVDPVEPEFKGEVDDKYQYSCESRNNRVHGWICMDLSVGFWQITPSYEFRSAGPLKQYITSHVGPTILSVFHSTHYTGADLVMKFRAAEEWKKVYGPIFIYLNALSNGESPATLWEDANQQTVYEIERWPYAFPASQDFPSSYQRGKVKGRLLVQDRYVTDGCVPAGGAYVGLAATGDAGSWQREYKGYQFWTITDDKGYFTITDIRAGQYNLYSWVNGFIGDYRCDNVINITSGCEVDVGELVYEPPRDGPTLWEIGIPDRTAAEFCIPDPNPKYINRLYVKHPDRYRQYGLWERYAELYPNEDLVYTIGTSDYKKDWFFAQVNRKIDNNTYQETTWRINFKLDGVNTNGTYKLRLALASVHSAELQVRVNDSEANPPLFTSGVIGKENTIARHGIHGLYWLFSIDVQGTLLVQGNNTFFLKQPRNISPFQGILYDYIRLEGPSSLTSNI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00553 662 Pfam Rhamnogalacturonate lyase family 30 224 IPR010325 -
Accr4g00553 662 Gene3D - 462 653 - -
Accr4g00553 662 Gene3D - 28 327 IPR014718 GO:0030246
Accr4g00553 662 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 656 - -
Accr4g00553 662 CDD RGL4_N 27 314 - -
Accr4g00553 662 Pfam Polysaccharide lyase family 4, domain II 379 450 IPR029413 -
Accr4g00553 662 SUPERFAMILY Galactose mutarotase-like 33 315 IPR011013 GO:0003824|GO:0005975|GO:0030246
Accr4g00553 662 SUPERFAMILY Galactose-binding domain-like 461 653 IPR008979 -
Accr4g00553 662 CDD RGL4_C 466 653 - -
Accr4g00553 662 CDD RGL4_M 355 454 IPR029413 -
Accr4g00553 662 Gene3D - 352 450 - -
Accr4g00553 662 FunFam Rhamnogalacturonate lyase B 352 451 - -
Accr4g00553 662 SUPERFAMILY Starch-binding domain-like 353 449 IPR013784 GO:0030246
Accr4g00553 662 Pfam Polysaccharide lyase family 4, domain III 464 652 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00553 Accr-Chr4 5362788 5370018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00553 27 656 Polysaccharide Lyase AT1G09890 65.457 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00553 K18195 - gmx:100786488 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00553 4 5362788 5370018 Accr4g00553 4 5362788 5370018 ECH