Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00552 ATGAAGATGTTGATCCTCACCAACTGTTTCCTGTTCTTCTTGCTGATGCTGGTTTTGGTTCTGGGCTATGTCTCTTATCCAGGAGTACGATTGGAAATTCAAGATAAGCATATTGTGATGGATAATGGCATAGTCCAAGTCACCTTATCAAATCCCGGAGGATCAGTCACCGGAATCCAGTACAATGGAATTGACAATTTGCTTGAAGTCCAAAACATGGAATTTGACAGAGGTTACTGGGATGTTGTATGGAGCGAGGCTGGTAAAAATGGAACAAAGGGTACATTGGATAGGTTGGAAGCCACAAATTTTACAGTAATTGTTCAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAACGTGGCTGCCTTCCCTTGAGGGAAAGATTCCGCCCCTCAGTATCGATAAAAGATTTATAATGCTTCGTGGTTCATCGGGCTTCTACACTTATGCCATATACGAGCATTTGAAGGGATGGCCTGCCTTCAATCTTGACAATACTCGGATTGCATTTAAACTTCGGAAAGACAAGTTCCATTACATGGTTGTAGCAGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGGGTGGAAGGAAGAGGGCAAGTTCTAGCCTATCCTGAAGCTGTCCTCCTTGTCGATCCTGTTGAGCCTGAATTCAAAGGGGAGGTGGATGACAAATATCAGTACTCGTGCGAGAGTCGCAACAACAGGGTTCATGGCTGGATATGTATGGATCTTTCTGTTGGGTTCTGGCAAATTACGCCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATCACTTCTCACGTGGGCCCCACCATACTCTCTGTATTTCACAGTACGCATTATACAGGAGCAGATCTAGTAATGAAATTTAGGGCTGCAGAAGAATGGAAGAAAGTGTATGGGCCCATTTTTATATACCTTAATGCTTTGTCTAACGGAGAAAGCCCGGCCACGCTATGGGAAGACGCTAACCAGCAGACGGTTTATGAAATTGAAAGGTGGCCCTATGCATTTCCAGCTTCACAAGACTTTCCCTCATCTTACCAACGAGGCAAGGTTAAAGGGAGATTACTGGTACAAGATAGGTATGTCACTGATGGGTGTGTCCCAGCTGGTGGCGCTTACGTGGGATTAGCTGCAACTGGAGATGCAGGATCTTGGCAGAGAGAATACAAGGGTTATCAGTTTTGGACTATCACTGATGATAAAGGCTACTTCACAATCACTGACATACGGGCTGGGCAGTATAATCTTTACTCCTGGGTCAATGGGTTTATCGGCGATTATCGATGTGACAACGTCATTAACATAACCTCAGGTTGTGAAGTTGATGTGGGGGAACTTGTTTATGAGCCTCCAAGAGATGGCCCCACCTTGTGGGAAATAGGCATCCCTGATCGCACTGCAGCTGAATTCTGTATCCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAAACATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACTATAGGAACCAGTGACTACAAAAAAGATTGGTTTTTTGCTCAAGTTAATAGGAAGATAGATAACAACACATACCAAGAAACCACATGGCGAATTAATTTCAAGCTTGATGGTGTAAATACCAATGGAACCTACAAATTGCGATTGGCTCTGGCATCTGTGCACTCTGCTGAGCTGCAAGTTCGGGTGAATGACTCAGAAGCAAACCCACCTTTGTTCACAAGTGGAGTGATTGGGAAGGAGAACACAATAGCCAGACATGGAATTCATGGGCTATATTGGCTGTTCAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAATAATACCTTTTTCCTAAAGCAACCAAGAAACATAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCCTCTTCTCTAACTAGTAATATATGA 1995 0.4381 MKMLILTNCFLFFLLMLVLVLGYVSYPGVRLEIQDKHIVMDNGIVQVTLSNPGGSVTGIQYNGIDNLLEVQNMEFDRGYWDVVWSEAGKNGTKGTLDRLEATNFTVIVQNEEQLELSFTRTWLPSLEGKIPPLSIDKRFIMLRGSSGFYTYAIYEHLKGWPAFNLDNTRIAFKLRKDKFHYMVVADNRQRFMPLPDDRVEGRGQVLAYPEAVLLVDPVEPEFKGEVDDKYQYSCESRNNRVHGWICMDLSVGFWQITPSYEFRSAGPLKQYITSHVGPTILSVFHSTHYTGADLVMKFRAAEEWKKVYGPIFIYLNALSNGESPATLWEDANQQTVYEIERWPYAFPASQDFPSSYQRGKVKGRLLVQDRYVTDGCVPAGGAYVGLAATGDAGSWQREYKGYQFWTITDDKGYFTITDIRAGQYNLYSWVNGFIGDYRCDNVINITSGCEVDVGELVYEPPRDGPTLWEIGIPDRTAAEFCIPDPNPKYINRLYVKHPDRYRQYGLWERYAELYPNEDLVYTIGTSDYKKDWFFAQVNRKIDNNTYQETTWRINFKLDGVNTNGTYKLRLALASVHSAELQVRVNDSEANPPLFTSGVIGKENTIARHGIHGLYWLFSIDVQGTLLVQGNNTFFLKQPRNISPFQGILYDYIRLEGPSSLTSNI 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00552 664 Gene3D - 354 452 - -
Accr4g00552 664 CDD RGL4_C 468 655 - -
Accr4g00552 664 CDD RGL4_M 357 456 IPR029413 -
Accr4g00552 664 Gene3D - 464 655 - -
Accr4g00552 664 Pfam Polysaccharide lyase family 4, domain II 381 452 IPR029413 -
Accr4g00552 664 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
Accr4g00552 664 Gene3D - 30 329 IPR014718 GO:0030246
Accr4g00552 664 Pfam Rhamnogalacturonate lyase family 32 226 IPR010325 -
Accr4g00552 664 FunFam Rhamnogalacturonate lyase B 354 453 - -
Accr4g00552 664 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Accr4g00552 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Accr4g00552 664 SUPERFAMILY Galactose mutarotase-like 35 317 IPR011013 GO:0003824|GO:0005975|GO:0030246
Accr4g00552 664 SUPERFAMILY Starch-binding domain-like 355 451 IPR013784 GO:0030246
Accr4g00552 664 CDD RGL4_N 29 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00552 Accr-Chr4 5362788 5370024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00552 29 658 Polysaccharide Lyase AT1G09890 65.457 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00552 K18195 - gmx:100786488 1067.37