Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00550 ATGTCGGCACAAGGAGTGCAACTGCATATAGGAGACAATCATGTGGTGATGGATAATGGCATAGTGAAAGTGTACTTAGCTAAACCAGGAGGATTTGTCACAAGAATACAATACAATGGAGTTGACAACATTCTTGAAGTTCTTAACCAAAGAGATAACAGAGGATATTGGGACGTCGTTTGGAGTCAAGAAGGCAGTACAGGAACCACTGGGACATTCGAGCGCGTGGTGGGAACAAATTTTAGAGTGATAGTGGAAAATGAGGAACAGGCTGAGATCTCATTTACAAGAATGTGGGACCCATCTCTGAAGGGAAAGCTTTCGCCATTGAATATAGACAAAAGGTATGTCATGCTTCGTAATTCAGCAGGCTTCTACTCATATGCCATTTTTGAACACCTAAAAGAATGGCCCGCTTTCAACATACCCCAGATCAGGATCGTCTTCCAACTCAGAAAAGACAGGTATCATTACATGGCTGTAGCGGATAATAGGCAAAGATTCATGCCACTTCCTGACGATAGATTACCTGGAAGAGGAAAAGAACTTGCCCCTCCTGAAGCAGTTTCACTTGTGAATCCTATAGAGCCAGAGTTCAAGGGGGAGGTGGATGACAAGTATCAATACTCGTGTGACAACAAAGATCTGAAGGTTCATGGGTGGATTAGCTCCGAAAAAGAAACTGAAGCTTTAATGGGTTTTTGGGTAATTATACCTAGCAATGAATTCCGATCAGGTGGGCCCGTTAAACAGAACCTCACCTCTCATGTAGGCCCCATAAGCCTCGCTATGTTCTTAAGTGCTCATTACGCTGGGGAGGATCTAGTTCTAAAACTCAAACCGAATGAGCCTTGGAAGAAAGTATTTGGGCCAATCTTTGTGTATCTGAACACTTTATCGGATGATCAAGACGCACCATGGCTCTGGGAGGATGCCAAAGATCAGATGACGAAGCAAGTTCAAAGTTGGCCTTATGATTTTCCAGCTTCAGAGGATTATCAGAAGTCTGACCAACGAGGCAGTGTTTGTGGCACAATACGAGTCCGAGACAGGTGTCAAAGTGACGACTATATATTGGCACAAGGTGCATATGTAGGACTAGCCCCACCTGGAGACGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACAAGAACAAACGAGGAAGGCTACTTCTCCATTAACGACATACGTAGTGGGGACTATAATCTCTATGCATGGGTTCCTGGTTTCATCGGAGAATACTGGAACAATGTTGTCCTCACCATCACCCCAGGTAGTGAAATAGATGTTGGTGACATTGTTTATGAGCCCCCGAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTCCCTGATCCTAATCCCATGTACATTAACAAGCTCTATGTCAACCATCCAGATAAGTTTAGGCAGTATGGTTTGTGGGAAAGATATGCAGAACTATATCTAGAGGAGGATCTGGTGTATACGGTCGGTGTTAGTGACTATGGGAAAGATTGGTTCTTTGCACAAGTCACCAGGAAGAAAGATGATGGAACTTACCAAGCAACTACATGGCAAATCAAGTTCAAGCTTGATAATGTGGTGAGAGGTGGGGCGTATAAGTTAAGGTTGGCACTTGCAACTGCAAATGCAGCCGAATTACAGGTGAGAGTGAATGATCCGAAGCAAGAGCCAGCTGTGTTCACGAGTGGTTTGATTGGAAATGACAACACAATAGCTAGGCATGGAATCCATGGACTCTACAGGCTATACAGTATCGATGTAGGGGGTGGTCTTCTGATAAAAGGAGATAATACCCTGTATCTCACGCAGGCCATGGCTACTGGTCCTTTCGAAGGGATTATGTATGACTATGTACGCCTTGAAAGCCCACAATAA 1920 0.4437 MSAQGVQLHIGDNHVVMDNGIVKVYLAKPGGFVTRIQYNGVDNILEVLNQRDNRGYWDVVWSQEGSTGTTGTFERVVGTNFRVIVENEEQAEISFTRMWDPSLKGKLSPLNIDKRYVMLRNSAGFYSYAIFEHLKEWPAFNIPQIRIVFQLRKDRYHYMAVADNRQRFMPLPDDRLPGRGKELAPPEAVSLVNPIEPEFKGEVDDKYQYSCDNKDLKVHGWISSEKETEALMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPIFVYLNTLSDDQDAPWLWEDAKDQMTKQVQSWPYDFPASEDYQKSDQRGSVCGTIRVRDRCQSDDYILAQGAYVGLAPPGDAGSWQRECKGYQFWTRTNEEGYFSINDIRSGDYNLYAWVPGFIGEYWNNVVLTITPGSEIDVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDKFRQYGLWERYAELYLEEDLVYTVGVSDYGKDWFFAQVTRKKDDGTYQATTWQIKFKLDNVVRGGAYKLRLALATANAAELQVRVNDPKQEPAVFTSGLIGNDNTIARHGIHGLYRLYSIDVGGGLLIKGDNTLYLTQAMATGPFEGIMYDYVRLESPQ 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00550 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 638 - -
Accr4g00550 639 Gene3D - 7 277 IPR014718 GO:0030246
Accr4g00550 639 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Accr4g00550 639 FunFam Rhamnogalacturonate lyase B 335 434 - -
Accr4g00550 639 CDD RGL4_C 449 636 - -
Accr4g00550 639 Gene3D - 335 434 - -
Accr4g00550 639 SUPERFAMILY Galactose-binding domain-like 444 636 IPR008979 -
Accr4g00550 639 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Accr4g00550 639 Pfam Polysaccharide lyase family 4, domain III 447 635 IPR029411 -
Accr4g00550 639 CDD RGL4_M 338 437 IPR029413 -
Accr4g00550 639 SUPERFAMILY Starch-binding domain-like 337 437 IPR013784 GO:0030246
Accr4g00550 639 Gene3D - 445 636 - -
Accr4g00550 639 CDD RGL4_N 12 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00550 Accr-Chr4 5347893 5352005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00550 1 638 Polysaccharide Lyase AT1G09890 65.258 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00550 K18195 - gmx:100815677 1080.47