Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00540 ATGGCCGCCGCGAAACCACAACGTTTGCAGGTTGGTCCATTCGAGAAACACGTACAGGGTCCAGTAGCAGTAGAGGACGACGACGTTGACTATGAGGATGGGGGTGCTAGTGGCGATGCTATGGATGATTTGGAAGAGGGAAATGTTAATTCAGTGACTGTGCCAAACCATGGAGGTGTTGTTACGACGTCCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTGTTTCCTACTGTGACACCAGAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACCTGATATACCTGCATGTGCTCCTTCTGTTGAAGTACCATTTGATGAAAGCAACAAGGGCGTATGTGATGCGCCAAAGCAGTTGAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACTCTGTGAGAAAAGAGGTGGCGCAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTTGAAAGAAAGTCCCGGTTCATCTAATTTGGATTCCACGCAAAGCTTTCATCAGGATGGCACTCATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGCGAGCTGGAGACTCCTCTTGAGGTCAAGCCTATTATCCTGGAAGGAGAATTGCTTGGTATCCATGACAAGCAAGGAATTTCAGAAGATCCTTCCAAGGTCATTGCTGAAGGATCAAATAATCATGCTGTCAACCCCAGTGATGAGGAATTGCGGTCTGGTGAAAGCTTATCAAACGCACTGTCAGCAGGCTTTGTGGATTCTTCAGCAAATGATGATGAGCAGGAACCTCTGGCTGAGCTTTCTAATCCTTCCGACACAGATATTGACATTCCCGGAAACTTCGATTAG 1044 0.4626 MAAAKPQRLQVGPFEKHVQGPVAVEDDDVDYEDGGASGDAMDDLEEGNVNSVTVPNHGGVVTTSRTSELTLSFEGEVYVFPTVTPEKVQAVLLLLGGPDIPACAPSVEVPFDESNKGVCDAPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNLDSTQSFHQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSELETPLEVKPIILEGELLGIHDKQGISEDPSKVIAEGSNNHAVNPSDEELRSGESLSNALSAGFVDSSANDDEQEPLAELSNPSDTDIDIPGNFD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00540 347 MobiDBLite consensus disorder prediction 1 22 - -
Accr4g00540 347 MobiDBLite consensus disorder prediction 171 195 - -
Accr4g00540 347 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Accr4g00540 347 MobiDBLite consensus disorder prediction 288 333 - -
Accr4g00540 347 ProSiteProfiles GATA-type zinc finger domain profile. 194 253 IPR000679 GO:0006355|GO:0043565
Accr4g00540 347 SMART tify_2 62 97 IPR010399 -
Accr4g00540 347 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Accr4g00540 347 Pfam CCT motif 130 171 IPR010402 GO:0005515
Accr4g00540 347 Gene3D - 195 247 IPR013088 GO:0006355|GO:0008270
Accr4g00540 347 CDD ZnF_GATA 199 243 IPR000679 GO:0006355|GO:0043565
Accr4g00540 347 Pfam tify domain 65 96 IPR010399 -
Accr4g00540 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 244 - -
Accr4g00540 347 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Accr4g00540 347 PANTHER GATA TRANSCRIPTION FACTOR 28 24 340 IPR045280 GO:0006355
Accr4g00540 347 MobiDBLite consensus disorder prediction 165 195 - -
Accr4g00540 347 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Accr4g00540 347 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Accr4g00540 347 MobiDBLite consensus disorder prediction 288 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00540 Accr-Chr4 5217526 5226180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00540 17 260 Tify Gene Family AT1G51600 46.014 1.81e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr4g00540 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00540 - - qsa:O6P43_019551 503.827