Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00539 ATGTACGAACAACTCCCATCAATGAACGTCACTAATCGGATCAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGCAGTGGGGTAGTCGGGGGCGTAGTGGAGGAAGTGAACTCCGATACCGTATATGTTTCCGGCAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAACTTACGCTTTCATTCCGTGGTCAAGTATACGTTTTTGACTCTGTTACCCCTGACAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCGCCGGGTTCGCAGTGTGAGGATATAGCCCCTCAAAATGATAGGGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGTAGCCTCTTTAAACAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAGCAAGATGGAGGTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCCGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTCCACCAGCTGAGCAGGTAATGTGA 795 0.4818 MYEQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIHYETQALEDGSGVVGGVVEEVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPQNDRGAMDYPGRCSQPHRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGGNSLGTVQESGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLPPAEQVM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00539 264 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Accr4g00539 264 SMART tify_2 73 108 IPR010399 -
Accr4g00539 264 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Accr4g00539 264 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Accr4g00539 264 Gene3D - 198 257 IPR013088 GO:0006355|GO:0008270
Accr4g00539 264 MobiDBLite consensus disorder prediction 181 221 - -
Accr4g00539 264 PANTHER GATA TRANSCRIPTION FACTOR 28 25 258 IPR045280 GO:0006355
Accr4g00539 264 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Accr4g00539 264 MobiDBLite consensus disorder prediction 173 227 - -
Accr4g00539 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 253 - -
Accr4g00539 264 Pfam tify domain 76 107 IPR010399 -
Accr4g00539 264 MobiDBLite consensus disorder prediction 1 16 - -
Accr4g00539 264 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Accr4g00539 264 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Accr4g00539 264 ProSiteProfiles GATA-type zinc finger domain profile. 202 251 IPR000679 GO:0006355|GO:0043565
Accr4g00539 264 MobiDBLite consensus disorder prediction 1 28 - -
Accr4g00539 264 Pfam CCT motif 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00539 Accr-Chr4 5194495 5199486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00539 11 257 Tify Gene Family AT4G24470 56.126 1.62e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr4g00539 CCT 6.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00539 - - qsa:O6P43_019552 370.548