LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g00538	ATGTACGAACAACTCCCATCAATGAACGTCACTAATCGGATCAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGCAGTGGGGTAGTCGGGGGCGTAGTGGAGGAAGTGAACTCCGATACCGTATATGTTTCCGGCAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAACTTACGCTTTCATTCCGTGGTCAAGTATACGTTTTTGACTCTGTTACCCCTGACAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCGCCGGGTTCGCAGTGTGAGGATATAGCCCCTCAAAATGATAGGGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGTAGCCTCTTTAAACAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAGCAAGATGGAGGTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCCGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTCCACCAGCTGAGCAGGTTGAACGGGATGATTCACATTCTCGGACGGCTAACCCTGCATGTAACAATCTTGTGTTCTCTGATAATGATAAGCTGGCATAG	870	0.4793	MYEQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIHYETQALEDGSGVVGGVVEEVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPQNDRGAMDYPGRCSQPHRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGGNSLGTVQESGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLPPAEQVERDDSHSRTANPACNNLVFSDNDKLA	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g00538	289	Gene3D	-	198	257	IPR013088	GO:0006355\|GO:0008270
	Accr4g00538	289	ProSitePatterns	GATA-type zinc finger domain.	208	235	IPR000679	GO:0006355\|GO:0043565
	Accr4g00538	289	SMART	tify_2	73	108	IPR010399	-
	Accr4g00538	289	CDD	ZnF_GATA	207	252	IPR000679	GO:0006355\|GO:0043565
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	181	221	-	-
	Accr4g00538	289	Pfam	CCT motif	140	182	IPR010402	GO:0005515
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	173	226	-	-
	Accr4g00538	289	ProSiteProfiles	Tify domain profile.	73	108	IPR010399	-
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	251	271	-	-
	Accr4g00538	289	Pfam	GATA zinc finger	208	244	IPR000679	GO:0006355\|GO:0043565
	Accr4g00538	289	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	204	255	-	-
	Accr4g00538	289	PANTHER	GATA TRANSCRIPTION FACTOR 28	25	264	IPR045280	GO:0006355
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	251	289	-	-
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	1	16	-	-
	Accr4g00538	289	SMART	GATA_3	202	255	IPR000679	GO:0006355\|GO:0043565
	Accr4g00538	289	ProSiteProfiles	CCT domain profile.	140	182	IPR010402	GO:0005515
	Accr4g00538	289	ProSiteProfiles	GATA-type zinc finger domain profile.	202	251	IPR000679	GO:0006355\|GO:0043565
	Accr4g00538	289	MobiDBLite	consensus disorder prediction	1	28	-	-
	Accr4g00538	289	Pfam	tify domain	76	107	IPR010399	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g00538	Accr-Chr4	5194495	5199606	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g00538	11	257	Tify Gene Family	AT4G24470	56.126	2.64e-87	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Accr4g00538		CCT	7.4e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g00538	-		-	pvu:PHAVU_008G182900g	381.719