LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g00524	ATGGTGAGGGAGAAGATTGAGATTAAGAAAATCGAGAACATAACGGCGAGGCAGGTGACATTCTCAAAGAGGAGGCAAGGGCTTATCAAGAAATCTCAAGAGCTTGCTGTTCTTTGTGATGCTGAGGTTGGTCTCATTGTTTTCTCTTCTACAGGAAAGCTCTATGATTATTCCAGTACTAGTAGCATAAACGACATCGTTACAAGGTATAATCTGCACTTTCGTGACAACAATGATCCATTGGACAGTCATTCCCTACAGCCGCAGAGCAGCAGTCAAAGCAGGTTGAGGAACCAGATAGCTGATAAAACCCACGAACTTCGGCAGCTTTACGGTGAGGATCTTGATGGACTCGGCCTCGATGATTTGCAGAAGCTGGGAAAAAAGCTTGACCTGGGACTCAATAGTGTGGCTCAGATTATTATGGGAAAGAGGTTTGCTGAAATCGAAGAACGTCAGAGGAAGGTAGACCATTTGGCCAAAGTGAACAAGCAGATAAAGAAGAAGGTGGCTATTATACGCAAAGGAAAAGACTTCATGACGAAGAACTCTGAGATAGGCAGGCTGAAAGGTGGTTCATCACGAACCATAGGCAATACTGTTTTGGACTGCAATAATGGCCTTCGTCTCGATGATGATACCTCTAGCACGTGTCTGAGGTTAGGGCTTCCCTTCCCTGATTGA	684	0.4488	MVREKIEIKKIENITARQVTFSKRRQGLIKKSQELAVLCDAEVGLIVFSSTGKLYDYSSTSSINDIVTRYNLHFRDNNDPLDSHSLQPQSSSQSRLRNQIADKTHELRQLYGEDLDGLGLDDLQKLGKKLDLGLNSVAQIIMGKRFAEIEERQRKVDHLAKVNKQIKKKVAIIRKGKDFMTKNSEIGRLKGGSSRTIGNTVLDCNNGLRLDDDTSSTCLRLGLPFPD	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g00524	227	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Accr4g00524	227	SUPERFAMILY	SRF-like	3	72	IPR036879	GO:0003677\|GO:0046983
	Accr4g00524	227	Gene3D	-	13	80	IPR036879	GO:0003677\|GO:0046983
	Accr4g00524	227	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	151	-	-
	Accr4g00524	227	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	CDD	MADS_MEF2_like	3	70	IPR033896	GO:0000977\|GO:0045944
	Accr4g00524	227	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Accr4g00524	227	Pfam	K-box region	91	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g00524	Accr-Chr4	5099587	5103176	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g00524	1	225	MADS-box Gene Family	AT2G22540	41.532	3.00e-52	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Accr4g00524		K-box	2.1e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g00524	-		-	pvy:116141471	184.496