Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00495 ATGACAATAATCCACTCCCACACCCCCCCTCCTCCCATTCTCCCACTCGATCATCACCATGGCCTCCGCTGCCTTGCCCTCTTTCTACTCGCTTTCCCGGCCACCGCGCAGTTCTTCTCAGCGCCTCCGCCTCCGCCCACCGACCCCTTTGCCAGGCTTAAGTTCGACAAGAATATGGCCATCATCATGGTCATCCTCGTCCTCGTGTTCTTCATTCTGGGCTTCCTTTCCATCTACACTCGCCAATGCGCAGAGCGCAGAATGAGAGGAAGACTCGACCTCACTCTCCCCATCGGCATCAGCAGCCGGCGATCGCGTGGTCTTGACCCCCAGATCATCGACAGTTTTCCCACTTTCGCTTACTCCTCCGTCAAGGGGCTTAAGATGGGAAGGACCTCGCTGGAATGCGCCGTCTGCTTGAACGAGTTCCAAGACCATGAAACTCTGCGTTTGCTACCCAAATGCAGCCACGTGTTTCATCCTAATTGTATCGATCTTTGGCTGTCCTCTCACTCCACCTGCCCCCTCTGCCGGGCCAACCTTATTCCTAAACCCGGTGATTCATCCTTCGTCGCCGTTCAGATCCCCCATCCGGACGTCGATTCCCCTCAACCTGATGCAAGTCCTAATACTCGTGAGGTCGCCCATGACAACATCAATACGGCGGCCCCGGAGACTCCGAGTCTGAGCCGAAATCAGACCGTGAACCGGAGCTGGATACCCGGGTCAAAGTCTACGGGGTTTCGATTGGCCGGATTATTCCCGCGTTCTCACTCCACGGGTCATTCCTTGCAGATTCAGCCCGGAGAGAATTGGGAAAGGTTTACTCTGAGATTACCGCAGGATGCCCAAGAGCAGTTACTAAAGCGCACAAATAGTTGCGTAGCGTTCACCAGGGAGAGCAGTCAGAGGACGGGTTATAGGACAAGAAGTATGGGGAGTGCACGCGGAAGGAATTACTATTTCCAGTACGAGCGATTCGGCGGCGAGGGGCGGCCGGAGCAGTGGGGCTTCACGATGAGGCCGCCGTTTTTTAGCAGGAGTAGTTCGATGGTGGCCAACAAGGCACCGGTGGATCCATCGGAGTTGGCTATGGACGACATCGGGGAACGATCTTCTGATCCTTTGTTTCCCGGAAACAAAGATTAG 1149 0.5544 MTIIHSHTPPPPILPLDHHHGLRCLALFLLAFPATAQFFSAPPPPPTDPFARLKFDKNMAIIMVILVLVFFILGFLSIYTRQCAERRMRGRLDLTLPIGISSRRSRGLDPQIIDSFPTFAYSSVKGLKMGRTSLECAVCLNEFQDHETLRLLPKCSHVFHPNCIDLWLSSHSTCPLCRANLIPKPGDSSFVAVQIPHPDVDSPQPDASPNTREVAHDNINTAAPETPSLSRNQTVNRSWIPGSKSTGFRLAGLFPRSHSTGHSLQIQPGENWERFTLRLPQDAQEQLLKRTNSCVAFTRESSQRTGYRTRSMGSARGRNYYFQYERFGGEGRPEQWGFTMRPPFFSRSSSMVANKAPVDPSELAMDDIGERSSDPLFPGNKD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00495 382 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Accr4g00495 382 Pfam Ring finger domain 135 178 IPR001841 -
Accr4g00495 382 SMART ring_2 136 177 IPR001841 -
Accr4g00495 382 FunFam E3 ubiquitin-protein ligase ATL6 98 184 - -
Accr4g00495 382 CDD RING-H2_EL5-like 135 178 - -
Accr4g00495 382 MobiDBLite consensus disorder prediction 349 382 - -
Accr4g00495 382 SUPERFAMILY RING/U-box 112 186 - -
Accr4g00495 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 183 IPR013083 -
Accr4g00495 382 PANTHER RING FINGER DOMAIN-CONTAINING 42 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00495 Accr-Chr4 4763470 4764618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00495 27 348 Rapid Response to Elicitors AT3G05200 38.507 2.66e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00495 K10664 - qsa:O6P43_019600 369.007