Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00493 ATGGCACTAGAGGCTGTAGTTTTCTCACAGGATCCCTTCTCGTATAGTTGCTGCAAGGACTCATACTCCTTTGCCGCAGCCTGGAACCCCGGCGAGCATGGCTTCCATGCAGAGGAAGAAAAAGCACCTGTCGAGGCCCGCCGATCACTTCTTTCCCCTGCCCCCACGGGTCGGCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGAGCTTGAGAACCAGAGGATGACTCACATTGCCGTGGAGCGCAATCGACGGAGGCAGATGAATGACTACTTGGCGGTGCTTCGCTCCTTAATGCCTCCATCTTACGTTCAAAGGGGGGACCAGGCTTCTATAATAGGAGGCGCCATTAACTTCGTGAAGGAGCTAGAGCAGCTCTTGCAGTCAATGGAGGGACGAAAGAAGAAGACGAAGCAACAATCAGAGAATTGTAGCTCGCCGTTCGCTGAGTTCTTCACGTTCCCTCAGTACTCCACTAATGCAAATAACGGCAGTACCAGTTCCCAGCAATGGGCCGTCGCAGACATCGAGGTCACCATGGTGGACAGCCACGCCAGCCTCAAGATACTCTCCAAGAAACGTTCCAACCAGCTCACCAAGATCGTCGTCGGCCTTCAAGCCCTCCGCCTCACCGTTCTCCACCTCAACGTCTCCACTCACGACGACATGGCCCTTTACTCTGCTAGCGTCAAGCTTGAAGATGGGTGCGAGCTGAATACGGTGGATGAAATCGCTGCTGCTGTGAATCAATTAATGAGCAGAATCCAAGAGGAAGCGCCTTTCTGA 795 0.5384 MALEAVVFSQDPFSYSCCKDSYSFAAAWNPGEHGFHAEEEKAPVEARRSLLSPAPTGRRKRRRTKSAKNKEELENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGRKKKTKQQSENCSSPFAEFFTFPQYSTNANNGSTSSQQWAVADIEVTMVDSHASLKILSKKRSNQLTKIVVGLQALRLTVLHLNVSTHDDMALYSASVKLEDGCELNTVDEIAAAVNQLMSRIQEEAPF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00493 264 Coils Coil 123 143 - -
Accr4g00493 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 144 IPR036638 GO:0046983
Accr4g00493 264 Gene3D - 65 154 IPR036638 GO:0046983
Accr4g00493 264 SMART finulus 81 132 IPR011598 GO:0046983
Accr4g00493 264 FunFam Basic helix-loop-helix transcription factor 66 141 - -
Accr4g00493 264 Pfam Helix-loop-helix DNA-binding domain 76 127 IPR011598 GO:0046983
Accr4g00493 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Accr4g00493 264 MobiDBLite consensus disorder prediction 39 73 - -
Accr4g00493 264 PANTHER MAX DIMERIZATION, MAD 46 261 - -
Accr4g00493 264 CDD bHLH_AtFAMA_like 78 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00493 Accr-Chr4 4727723 4728876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00493 1 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.829 2.98e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr4g00493 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00493 - - gmx:100805420 319.316