Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00492 ATGATGCACAGAAAGCTCTTCCCAGCATCAACCACGACAAATCAAACCCATGAGTGTTCTGATTTGAGTGACCCAGCTTGCCCTTTCAACTGCTACTCTTACCCAGACCGCTACTTCTCGCCGCCGCCGCCCATTTCACCTCTAAGTAATCAGATCTCGTCCTACTTGGCCATCGCTGCTTCACTATTCACTGTCGTATTTGTTCTTATCGGTTTCTACGTTCTCAAAGTAAAGTGCTACTTCGATTGGTGTGGTTGGAGACGCAATGGATCCTTTAGCACCCAAACAGGCAGACTTGAGGATGAGTTTGTTGGTGAGAATCAAGTTGATCATCCTATCTGGCTGATAACCACCATTGGTTTACAACAGTCAATCATAAACTCCATTACGGTTTGCAAGTACAAAAAGGGTGAGGGATTGATCGAGGGAACTGAATGTTTAGTGTGCTTGAGTGAATTCAAGGAAGACGAAACCTTGAGAGTGTTGCCAATGTGCAACCACGCCTTTCACATCCCCTGTATCGACACGTGGTTGCGCTCTCGTATCAATTGTCCTCTTTGTCGTGCCCCTATTGTCCCTAACAATGCCAGTTCCGATGCAGCCATCTTAAATGGGAGTTCAATGGAGGAAAACTCTGACACAGCGGTGAGAAATGAATACGCCCAAGTTGAGCGTGATGGCGGTGAATCAATTATCATGATCTCCGAAAACCGAGAGGGAACACGACAAGAAGGGGAAACTGAAGACTTCACGCATGAATCAATTTTGAAGGCGTGCCCTGATGAGGATGAACAGATTGTAGATGAAATACAAAAAGGAACCAATTCTGTTTCGATGGATTCTTCCGTTGATCCTACAAACGGTGACAATGAACGACACACGGTCAATCTTCTGAAGAAAGATGGTGAATATTCAACCCTCTTTAAATCAGCGCGTCGTTCTTCAGTTTCACAATGTCTTCACGTAACCCCTATTTCCATGAAGAGGTCAGCCGTCTCCTGCTGCAGGAGGATTGCATCTGCGAGGGGCTACAGGAGTCTTAATTCAAGTTTTCCTCACTAG 1062 0.4576 MMHRKLFPASTTTNQTHECSDLSDPACPFNCYSYPDRYFSPPPPISPLSNQISSYLAIAASLFTVVFVLIGFYVLKVKCYFDWCGWRRNGSFSTQTGRLEDEFVGENQVDHPIWLITTIGLQQSIINSITVCKYKKGEGLIEGTECLVCLSEFKEDETLRVLPMCNHAFHIPCIDTWLRSRINCPLCRAPIVPNNASSDAAILNGSSMEENSDTAVRNEYAQVERDGGESIIMISENREGTRQEGETEDFTHESILKACPDEDEQIVDEIQKGTNSVSMDSSVDPTNGDNERHTVNLLKKDGEYSTLFKSARRSSVSQCLHVTPISMKRSAVSCCRRIASARGYRSLNSSFPH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00492 353 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Accr4g00492 353 SMART FANCL_C_2 142 195 - -
Accr4g00492 353 MobiDBLite consensus disorder prediction 1 21 - -
Accr4g00492 353 MobiDBLite consensus disorder prediction 7 21 - -
Accr4g00492 353 Pfam Ring finger domain 145 188 IPR001841 -
Accr4g00492 353 PANTHER RING-H2 FINGER PROTEIN ATL16 41 289 IPR044600 GO:0016567|GO:0016740
Accr4g00492 353 CDD RING-H2_EL5-like 145 188 - -
Accr4g00492 353 SMART ring_2 146 187 IPR001841 -
Accr4g00492 353 FunFam RING-H2 finger protein ATL54 121 194 - -
Accr4g00492 353 SUPERFAMILY RING/U-box 139 194 - -
Accr4g00492 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00492 Accr-Chr4 4719820 4720881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00492 3 261 C3H Transcription Factor Family AT1G72220 39.934 1.06e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00492 - - pcin:129294734 503.056