Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00491 ATGGCGCTACTTCGTATCTCCTGCCTCCCGTCAACAGCTAATTTCTCCGCAGAACACCAACTTCGCCCGCTCTCTTCTCTCCTTAGTCTTCCCCATCCCTCCGTCGCCAATCTCTCGTTCTGTCCCTCGTCTTCCTCGTTTCATTTTCTACCTCTGTCCCTTGTGCATCCCTCAAACGACAGAACCAAAGAAATTTCCCATTTTCTACCAATATTTGCCACTACATCCCAAGAACAAGCGCAGACTTCCTCTCCTTCTAATTTTTCCGATGACAGCCAACCTGATGAGGCACAAGCTGAAGAATTTTCTCGAACCAGGTTGCTTGCTCAAAACCTACCTTGGACCAGTACTCCTGAAGACGTTCGTTCTTTGTTCGGGAGGCATGGGAGGGTCCTAGACGTTGAGTTATCGATGTACAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGCTTCGGAAGAAGAGGCTCTTGCGGCTTTGAAAAGTCTCGAATCGTATGAATATGAAGGGCGTACATTGAGACTCGCATATGCTAGGCCGAAAAAGAAGAAAGGTCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTTGTTGCAGAATTGTCCTATGAAGCGAGGGCTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGTGGTAGTGTTGTTTCTGCCGAGGTTATATTTCATGACAACCCTAGAAGGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGAGGCTGCCCTTTCTGAGTTCCAAGGGAAGATTTTTATGGGAAGGCCAATCAGGGTGGCACGTAGCAAGCAGTTTGTTAAACAACCGGTAGAGGAGAGTGCAAGTTCTGAAGATACATCTTCTGACACCAGCGTGAATGGGGTAGAAGCAGATAGAACCGATTGA 924 0.4643 MALLRISCLPSTANFSAEHQLRPLSSLLSLPHPSVANLSFCPSSSSFHFLPLSLVHPSNDRTKEISHFLPIFATTSQEQAQTSSPSNFSDDSQPDEAQAEEFSRTRLLAQNLPWTSTPEDVRSLFGRHGRVLDVELSMYNKTRNRGLAFVEMASEEEALAALKSLESYEYEGRTLRLAYARPKKKKGPPPVQQKTVTFNIFVAELSYEARAKDLREFFDSGSGSVVSAEVIFHDNPRRSAGYGFVSFKSKKEAEAALSEFQGKIFMGRPIRVARSKQFVKQPVEESASSEDTSSDTSVNGVEADRTD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00491 307 SUPERFAMILY RNA-binding domain, RBD 86 191 IPR035979 GO:0003676
Accr4g00491 307 SMART rrm1_1 106 178 IPR000504 GO:0003723
Accr4g00491 307 SMART rrm1_1 199 273 IPR000504 GO:0003723
Accr4g00491 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Accr4g00491 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Accr4g00491 307 PANTHER OS02G0815200 PROTEIN 25 276 - -
Accr4g00491 307 SUPERFAMILY RNA-binding domain, RBD 189 280 IPR035979 GO:0003676
Accr4g00491 307 Gene3D - 71 188 IPR012677 -
Accr4g00491 307 MobiDBLite consensus disorder prediction 79 93 - -
Accr4g00491 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 271 IPR000504 GO:0003723
Accr4g00491 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Accr4g00491 307 MobiDBLite consensus disorder prediction 79 102 - -
Accr4g00491 307 Gene3D - 189 305 IPR012677 -
Accr4g00491 307 MobiDBLite consensus disorder prediction 281 301 - -
Accr4g00491 307 MobiDBLite consensus disorder prediction 277 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00491 Accr-Chr4 4715154 4716871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00491 105 277 Eukaryotic Initiation Factors Gene Family AT3G16380 30.978 2.24e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00491 - - qsa:O6P43_015341 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00491 4 4715154 4716871 Accr4g00491 4 4715154 4716871 ECH