Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00480 ATGGCGGGAGGACCCCGAGATCGCAGAGCTGATGCTCTTGGAGACCTTCGAGTCCTCCCCGATGAAATCCTCTGCGCAATTTTAGAGGAACTCACTCCTCGTGATGTTGCTCGCCTCGCTTGCGTTAGCAGCGTAATGTACATACTTTGCTATGAAGAACCATTATGGATGACTTTATGCCTTAAAGGAGCGTCTGGCTTACTTCAGTACAAAAGCTCTTGGAAGAAAACTGCTCTGCATCGTGAGAATTTGCCAGACAAATACATTGAGTGTAACAGGGGATTTCTGCATTTTGACGGATTTAATTCGTTATATTTGTATAGAAGATTGTACAGGTGTCATGCCAAGTTGGATGCATTTTATGTGGATAATGGAAATGTGGAAAGAAGAAAAGATATCTCTCTAGAAGACTTCCATGCTGAGTATGATGGGAAGAAACCGGTAATGCTTACTGGATTGGCTGATGCGTGGCCTGCAAGGCATAAGTGGACAACTGATCAGCTGTTGACAAACTGTGGAGATGTTGCTTTTAAGATTTCACATCGGAGTTCTCGGAAGATTTTGATGAAGTTTAAGGATTATGTTTCATATATGAAACTGCAGCAAGATGAAGATCCATTATACATTTTTGATGAAAAGTTTGGTGATATTGCACCCAGCTTGCTGAAGGATTACTGTGTGCCTCATTTGTTTCAAGAAGACTACTTTGATATTTTAAATGAAGATAAACGACCACCCTACAGGTGGCTCATAATTGGGCCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGTCGCAAAAGGTGGGCATTGTATCCTCCAGGAAAGGTGCCTTTGGGAGTCACAGTGCATGTCAATGAAGATGATGGTGATGTTAACATTGAGACACCATCATCACTGCAGTGGTGGCTGGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCATTGTGTTCTAAACTTGGAAACAACTATCGCTGTCACGCAGAACTTTGTGAATTCCAGTAACTTTGAATTTGTATGTTTGGATATGGCCCCTGGTTATCGTCATAAAGGAGTTTGCCGTGCTGGATTGCTAGCTCTTGATGATGATGGTTATGAAGATGTCAAAAAGAATACGTTGTGTGATGAACAGAATTCAAGTCATTCCATTCTGTCAAGGAGGGAGAAAAGAGCCAGAAACGATGAAGATGGAGATGATTTGAATAATGAAAGAACAAAAAATGGTGCATCTAGATATAATTTGTGGAAAGATGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGGATAAAGATAGGGACCACTACAGGTCCCCTTGGAGCTCAGGCAACAGCATTGGCCAGCGAGAGCTAAGAGAATGGTTATCCAAACTTTGGGTTCGAAAACCAGAAATGAGAGAGCTGATTTGGAAGGGGGCTTGTATTGCACTAAATGCTGACAAGTGGTCAGAATGCCTGTATGAAATTTGTTGCTTGCACGATATGCCCTCTCCCCTTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTTTCTTGTGGGAAACACTGTTGTCAAAATTTTTGTTGAAGGAGGGCTAGAAGCTGCACTTTATGGTCTAGGCACAGAGCTTGAGTTTTACAATATATTGCATGAAGTCAACTCTTCTCTTAAGAATCATATTCCTGAGGTTTTGGGCTGCGGCATTCTTTATCTTGACAATGGAACGTATACCAACCTTCCTTGGGATGGAAAGGGAGTCCCTGATATTGTCACCAAGAATAATCTAACTGGGCAAAAATGTGGAGTTGATGATTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATGCTGAGATGCCAAAACCCGAATCAATTAGTTCAGCTGGTCCCTCAAATATATGGCCTTATATTATAACAAAACGTTGTGAGGGTAAAATATTTGCAGAGCTAAGAGATAGACTATCAAGGGAAGATGTAGCAAACTTAGCTTCTTTCCTGGGAGAGAAGTTGTGCCACATTCACCTTCTACCACGTCCACCATTGAACATTTTACCTTTCTCTGATATTGAACAGGATTCAGGCTTGCCTAAGATTAATGGTAATTTTGCAAGTTTTAATTATAAATCGAGCATGGTAGCAGAGTGGGAAATCTTCATTGGAACATTAACAAGGAGGAGGAAGGATGTTTTGAGCCGTTTGACTAAGTGGGGAGACCCGATCCCTAGGAAATTGATAGAGAAGGTCGATGAATATATCCCTCATCTATTTGCAAATATGTTGAATATAACTGAGGGCATTGCTTGTAAACCATGCTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCTTGTGTTTCTACCTCAAGTGAAACTTGTGGTGAGGAAGCGCAGGCAGACAATGATTTTTTGTGTGATTCCAGCGTAAATAGAGATGTGAAATCATGGCGTCCTAGCTACATCCTTGATTTCAGTGATCTTTCAATAGGTGATCCTATATTTGATTTGATACCGATTTATTTAGATGTATTTAGAGGTGATTCCTATCTCCTAAAGCTATTTCTAGAAAGCTACAAGCTTCCTTTTGCAATTAATAATTCAAAGAATGATTCGACGGAGAATGATGATAAATTTGGCCGACTTTCATATCTTGCCATGTGCTACTGTATATTGCATGATGATGATGTCTTGGGAGCTATTTTTAGTATATGGGATGAACTTAGATCAGCAAATTCATGGGAAGAGGTTGAATTGACTGTGTGGGGGGAGCTGAACAATTACAAAGGCTTTCCTTGA 2907 0.4066 MAGGPRDRRADALGDLRVLPDEILCAILEELTPRDVARLACVSSVMYILCYEEPLWMTLCLKGASGLLQYKSSWKKTALHRENLPDKYIECNRGFLHFDGFNSLYLYRRLYRCHAKLDAFYVDNGNVERRKDISLEDFHAEYDGKKPVMLTGLADAWPARHKWTTDQLLTNCGDVAFKISHRSSRKILMKFKDYVSYMKLQQDEDPLYIFDEKFGDIAPSLLKDYCVPHLFQEDYFDILNEDKRPPYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSSNFEFVCLDMAPGYRHKGVCRAGLLALDDDGYEDVKKNTLCDEQNSSHSILSRREKRARNDEDGDDLNNERTKNGASRYNLWKDGFSYDINFLSMFLDKDRDHYRSPWSSGNSIGQRELREWLSKLWVRKPEMRELIWKGACIALNADKWSECLYEICCLHDMPSPLDDERLPVGTGSNPVFLVGNTVVKIFVEGGLEAALYGLGTELEFYNILHEVNSSLKNHIPEVLGCGILYLDNGTYTNLPWDGKGVPDIVTKNNLTGQKCGVDDFSFGVWGKKQFEYRNAEMPKPESISSAGPSNIWPYIITKRCEGKIFAELRDRLSREDVANLASFLGEKLCHIHLLPRPPLNILPFSDIEQDSGLPKINGNFASFNYKSSMVAEWEIFIGTLTRRRKDVLSRLTKWGDPIPRKLIEKVDEYIPHLFANMLNITEGIACKPCSWIHSDIMDDNIYMEPSCVSTSSETCGEEAQADNDFLCDSSVNRDVKSWRPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKLFLESYKLPFAINNSKNDSTENDDKFGRLSYLAMCYCILHDDDVLGAIFSIWDELRSANSWEEVELTVWGELNNYKGFP 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00480 968 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 13 582 - -
Accr4g00480 968 ProSiteProfiles JmjC domain profile. 216 379 IPR003347 -
Accr4g00480 968 ProSiteProfiles F-box domain profile. 13 59 IPR001810 GO:0005515
Accr4g00480 968 Pfam Cupin-like domain 145 365 IPR041667 -
Accr4g00480 968 Gene3D Cupin 111 364 - -
Accr4g00480 968 CDD F-box_SF 19 51 - -
Accr4g00480 968 Gene3D - 10 89 - -
Accr4g00480 968 FunFam F-box protein At1g78280 107 364 - -
Accr4g00480 968 SUPERFAMILY Protein kinase-like (PK-like) 665 895 IPR011009 -
Accr4g00480 968 MobiDBLite consensus disorder prediction 411 436 - -
Accr4g00480 968 Pfam F-box-like 18 62 IPR001810 GO:0005515
Accr4g00480 968 MobiDBLite consensus disorder prediction 413 436 - -
Accr4g00480 968 SUPERFAMILY F-box domain 10 76 IPR036047 GO:0005515
Accr4g00480 968 SUPERFAMILY Clavaminate synthase-like 126 371 - -
Accr4g00480 968 SMART cupin_9 207 374 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00480 Accr-Chr4 4636704 4645116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00480 4 964 Glycosyltransferase AT1G78280 61.429 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr4g00480 Cupin_8 7e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00480 - - gmx:100792541 1540.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00480 4 4636704 4645116 Accr4g00480 4 4636704 4645116 ECH