Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00479 ATGATGGAACCTTCAACGACTCAGATGGCGGGAGGACCCCGAGATCGCAGAGCTGATGCTCTTGGAGACCTTCGAGTCCTCCCCGATGAAATCCTCTGCGCAATTTTAGAGGAACTCACTCCTCGTGATGTTGCTCGCCTCGCTTGCGTTAGCAGCGTAATGTACATACTTTGCTATGAAGAACCATTATGGATGACTTTATGCCTTAAAGGAGCGTCTGGCTTACTTCAGTACAAAAGCTCTTGGAAGAAAACTGCTCTGCATCGTGAGAATTTGCCAGACAAATACATTGAGTGTAACAGGGGATTTCTGCATTTTGACGGATTTAATTCGTTATATTTGTATAGAAGATTGTACAGGTGTCATGCCAAGTTGGATGCATTTTATGTGGATAATGGAAATGTGGAAAGAAGAAAAGATATCTCTCTAGAAGACTTCCATGCTGAGTATGATGGGAAGAAACCGGTAATGCTTACTGGATTGGCTGATGCGTGGCCTGCAAGGCATAAGTGGACAACTGATCAGCTGTTGACAAACTGTGGAGATGTTGCTTTTAAGATTTCACATCGGAGTTCTCGGAAGATTTTGATGAAGTTTAAGGATTATGTTTCATATATGAAACTGCAGCAAGATGAAGATCCATTATACATTTTTGATGAAAAGTTTGGTGATATTGCACCCAGCTTGCTGAAGGATTACTGTGTGCCTCATTTGTTTCAAGAAGACTACTTTGATATTTTAAATGAAGATAAACGACCACCCTACAGGTGGCTCATAATTGGGCCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGTCGCAAAAGGTGGGCATTGTATCCTCCAGGAAAGGTGCCTTTGGGAGTCACAGTGCATGTCAATGAAGATGATGGTGATGTTAACATTGAGACACCATCATCACTGCAGTGGTGGCTGGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCATTGTGTTCTAAACTTGGAAACAACTATCGCTGTCACGCAGAACTTTGTGAATTCCAGTAACTTTGAATTTGTATGTTTGGATATGGCCCCTGGTTATCGTCATAAAGGAGTTTGCCGTGCTGGATTGCTAGCTCTTGATGATGATGGTTATGAAGATGTCAAAAAGAATACGTTGTGTGATGAACAGAATTCAAGTCATTCCATTCTGTCAAGGAGGGAGAAAAGAGCCAGAAACGATGAAGATGGAGATGATTTGAATAATGAAAGAACAAAAAATGGTGCATCTAGATATAATTTGTGGAAAGATGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGGATAAAGATAGGGACCACTACAGGTCCCCTTGGAGCTCAGGCAACAGCATTGGCCAGCGAGAGCTAAGAGAATGGTTATCCAAACTTTGGGTTCGAAAACCAGAAATGAGAGAGCTGATTTGGAAGGGGGCTTGTATTGCACTAAATGCTGACAAGTGGTCAGAATGCCTGTATGAAATTTGTTGCTTGCACGATATGCCCTCTCCCCTTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTTTCTTGTGGGAAACACTGTTGTCAAAATTTTTGTTGAAGGAGGGCTAGAAGCTGCACTTTATGGTCTAGGCACAGAGCTTGAGTTTTACAATATATTGCATGAAGTCAACTCTTCTCTTAAGAATCATATTCCTGAGGTTTTGGGCTGCGGCATTCTTTATCTTGACAATGGAACGTATACCAACCTTCCTTGGGATGGAAAGGGAGTCCCTGATATTGTCACCAAGAATAATCTAACTGGGCAAAAATGTGGAGTTGATGATTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATGCTGAGATGCCAAAACCCGAATCAATTAGTTCAGCTGGTCCCTCAAATATATGGCCTTATATTATAACAAAACGTTGTGAGGGTAAAATATTTGCAGAGCTAAGAGATAGACTATCAAGGGAAGATGTAGCAAACTTAGCTTCTTTCCTGGGAGAGAAGTTGTGCCACATTCACCTTCTACCACGTCCACCATTGAACATTTTACCTTTCTCTGATATTGAACAGGATTCAGGCTTGCCTAAGATTAATGGTAATTTTGCAAGTTTTAATTATAAATCGAGCATGGTAGCAGAGTGGGAAATCTTCATTGGAACATTAACAAGGAGGAGGAAGGATGTTTTGAGCCGTTTGACTAAGTGGGGAGACCCGATCCCTAGGAAATTGATAGAGAAGGTCGATGAATATATCCCTCATCTATTTGCAAATATGTTGAATATAACTGAGGGCATTGCTTGTAAACCATGCTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCTTGTGTTTCTACCTCAAGTGAAACTTGTGGTGAGGAAGCGCAGGCAGACAATGATTTTTTGTGTGATTCCAGCGTAAATAGAGATGTGAAATCATGGCGTCCTAGCTACATCCTTGATTTCAGTGATCTTTCAATAGGTGATCCTATATTTGATTTGATACCGATTTATTTAGATGTATTTAGAGGTGATTCCTATCTCCTAAAGCTATTTCTAGAAAGCTACAAGCTTCCTTTTGCAATTAATAATTCAAAGAATGATTCGACGGAGAATGATGATAAATTTGGCCGACTTTCATATCTTGCCATGTGCTACTGTATATTGCATGATGATGATGTCTTGGGAGCTATTTTTAGTATATGGGATGAACTTAGATCAGCAAATTCATGGGAAGAGGTTGAATTGACTGTGTGGGGGGAGCTGAACAATTACAAAGGCTTTCCTTGA 2931 0.407 MMEPSTTQMAGGPRDRRADALGDLRVLPDEILCAILEELTPRDVARLACVSSVMYILCYEEPLWMTLCLKGASGLLQYKSSWKKTALHRENLPDKYIECNRGFLHFDGFNSLYLYRRLYRCHAKLDAFYVDNGNVERRKDISLEDFHAEYDGKKPVMLTGLADAWPARHKWTTDQLLTNCGDVAFKISHRSSRKILMKFKDYVSYMKLQQDEDPLYIFDEKFGDIAPSLLKDYCVPHLFQEDYFDILNEDKRPPYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSSNFEFVCLDMAPGYRHKGVCRAGLLALDDDGYEDVKKNTLCDEQNSSHSILSRREKRARNDEDGDDLNNERTKNGASRYNLWKDGFSYDINFLSMFLDKDRDHYRSPWSSGNSIGQRELREWLSKLWVRKPEMRELIWKGACIALNADKWSECLYEICCLHDMPSPLDDERLPVGTGSNPVFLVGNTVVKIFVEGGLEAALYGLGTELEFYNILHEVNSSLKNHIPEVLGCGILYLDNGTYTNLPWDGKGVPDIVTKNNLTGQKCGVDDFSFGVWGKKQFEYRNAEMPKPESISSAGPSNIWPYIITKRCEGKIFAELRDRLSREDVANLASFLGEKLCHIHLLPRPPLNILPFSDIEQDSGLPKINGNFASFNYKSSMVAEWEIFIGTLTRRRKDVLSRLTKWGDPIPRKLIEKVDEYIPHLFANMLNITEGIACKPCSWIHSDIMDDNIYMEPSCVSTSSETCGEEAQADNDFLCDSSVNRDVKSWRPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKLFLESYKLPFAINNSKNDSTENDDKFGRLSYLAMCYCILHDDDVLGAIFSIWDELRSANSWEEVELTVWGELNNYKGFP 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00479 976 SMART cupin_9 215 382 IPR003347 -
Accr4g00479 976 Pfam Cupin-like domain 153 373 IPR041667 -
Accr4g00479 976 FunFam F-box protein At1g78280 115 372 - -
Accr4g00479 976 CDD F-box_SF 27 59 - -
Accr4g00479 976 SUPERFAMILY F-box domain 18 84 IPR036047 GO:0005515
Accr4g00479 976 Gene3D Cupin 119 372 - -
Accr4g00479 976 ProSiteProfiles JmjC domain profile. 224 387 IPR003347 -
Accr4g00479 976 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 21 590 - -
Accr4g00479 976 SUPERFAMILY Clavaminate synthase-like 134 379 - -
Accr4g00479 976 ProSiteProfiles F-box domain profile. 21 67 IPR001810 GO:0005515
Accr4g00479 976 MobiDBLite consensus disorder prediction 419 444 - -
Accr4g00479 976 Gene3D - 17 97 - -
Accr4g00479 976 MobiDBLite consensus disorder prediction 421 444 - -
Accr4g00479 976 Pfam F-box-like 26 70 IPR001810 GO:0005515
Accr4g00479 976 SUPERFAMILY Protein kinase-like (PK-like) 673 903 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00479 Accr-Chr4 4636680 4645116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00479 12 972 Glycosyltransferase AT1G78280 61.429 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr4g00479 Cupin_8 7e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00479 - - gmx:100792541 1540.78