Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00474 ATGAACCGGCCGAGTAATCATCATCAGCTTCAGCCTCTTCCTCTACTGAGCAGCTTCCTCGGTTCAACTCCTTTAAGCTCCAAACCTTACCCTACGACTACGACTCATGATGATGATGATGCTGGTGAGGAGGATGTCACAGTAGCCTTGCGCATAGGACTCCCCCATAATTCCAGTCCCGCTTCTTCAGGTCCAAATGGAGTCCTCAATGAAGCCCAAGTACCCAGGAAATACTGGATCCCAACCCAAGAACAAATCCTCATCGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAATAATCTTCAGATGCACATGTGGGGACATGGGTCACAGTACCGAAGAGGACCAGAGTCGCTGAAAAGAACACATCCAAGGCCGTTGTTGGACATTCCGTGTTATTGTTGCGCAAGAGGATGCAGGAACAACATAGAGCACCCGAGGGCTAAGCCTCTGAAGGATTTTAGGACACTGCAGACACATTACAAGAGGAAGCATGGAAGCAAACCTTTTATGTGTCGCAAGTGTGGCAAGACACTGGCCGTGAAGGGAGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCGTTGGCTTTGCGTCTGTGGCTCTGATTTTAAACATAAGAGGTCGCTTAAGGACCATATCAAAGCGTTTGGCTCTGCTCACTACCCTCTTTCTTCTTCCTCCGATGCCATCTGA 717 0.4868 MNRPSNHHQLQPLPLLSSFLGSTPLSSKPYPTTTTHDDDDAGEEDVTVALRIGLPHNSSPASSGPNGVLNEAQVPRKYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCRNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSSDAI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00474 238 SUPERFAMILY beta-beta-alpha zinc fingers 88 115 IPR036236 -
Accr4g00474 238 SMART c2h2final6 177 197 IPR013087 -
Accr4g00474 238 SMART c2h2final6 93 115 IPR013087 -
Accr4g00474 238 FunFam zinc finger protein WIP2-like 92 115 - -
Accr4g00474 238 FunFam Zinc finger protein WIP2 146 228 - -
Accr4g00474 238 Gene3D Classic Zinc Finger 92 115 - -
Accr4g00474 238 PANTHER ZINC FINGER PROTEIN WIP2 13 231 IPR043584 GO:0003700|GO:0010468
Accr4g00474 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Accr4g00474 238 SUPERFAMILY beta-beta-alpha zinc fingers 159 197 IPR036236 -
Accr4g00474 238 Pfam Zinc finger, C2H2 type 93 112 IPR013087 -
Accr4g00474 238 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Accr4g00474 238 Gene3D Classic Zinc Finger 136 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00474 Accr-Chr4 4579668 4580572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00474 6 230 C2H2 Transcription Factor Family AT1G34790 60.163 5.24e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g00474 zf-C2H2 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00474 - - ccaj:109809318 379.022