Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00473 ATGGAGCCCTCTGATACAATATGTAGCTCTTATTACCTCCCTTATTCACGTGTTGATCCTACTGATTCCAATCACTTTTTTTTGCCTGCCATGAACCGGCCGAGTAATCATCATCAGCTTCAGCCTCTTCCTCTACTGAGCAGCTTCCTCGGTTCAACTCCTTTAAGCTCCAAACCTTACCCTACGACTACGACTCATGATGATGATGATGCTGGTGAGGAGGATGTCACAGTAGCCTTGCGCATAGGACTCCCCCATAATTCCAGTCCCGCTTCTTCAGGTCCAAATGGAGTCCTCAATGAAGCCCAAGTACCCAGGAAATACTGGATCCCAACCCAAGAACAAATCCTCATCGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAATAATCTTCAGATGCACATGTGGGGACATGGGTCACAGTACCGAAGAGGACCAGAGTCGCTGAAAAGAACACATCCAAGGCCGTTGTTGGACATTCCGTGTTATTGTTGCGCAAGAGGATGCAGGAACAACATAGAGCACCCGAGGGCTAAGCCTCTGAAGGATTTTAGGACACTGCAGACACATTACAAGAGGAAGCATGGAAGCAAACCTTTTATGTGTCGCAAGTGTGGCAAGACACTGGCCGTGAAGGGAGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCGTTGGCTTTGCGTCTGTGGCTCTGATTTTAAACATAAGAGGTCGCTTAAGGACCATATCAAAGCGTTTGGCTCTGCTCACTACCCTCTTTCTTCTTCCTCCGATGCCATCTGA 807 0.4783 MEPSDTICSSYYLPYSRVDPTDSNHFFLPAMNRPSNHHQLQPLPLLSSFLGSTPLSSKPYPTTTTHDDDDAGEEDVTVALRIGLPHNSSPASSGPNGVLNEAQVPRKYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCRNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSSDAI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00473 268 SUPERFAMILY beta-beta-alpha zinc fingers 118 145 IPR036236 -
Accr4g00473 268 SMART c2h2final6 123 145 IPR013087 -
Accr4g00473 268 SMART c2h2final6 207 227 IPR013087 -
Accr4g00473 268 SUPERFAMILY beta-beta-alpha zinc fingers 189 227 IPR036236 -
Accr4g00473 268 Gene3D Classic Zinc Finger 122 145 - -
Accr4g00473 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Accr4g00473 268 FunFam Zinc finger protein WIP2 176 258 - -
Accr4g00473 268 FunFam zinc finger protein WIP2-like 122 145 - -
Accr4g00473 268 Gene3D Classic Zinc Finger 165 255 - -
Accr4g00473 268 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Accr4g00473 268 PANTHER ZINC FINGER PROTEIN WIP2 31 261 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00473 Accr-Chr4 4579578 4580572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00473 27 260 C2H2 Transcription Factor Family AT1G34790 58.755 1.54e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g00473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00473 - - ccaj:109809318 385.956