Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00472 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAGATATTTCGAGCAGTTCGGAGACATTCTTGAGGCTGTTATAATCACCGATAAGAACACCGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCCAGAAGGGCCTGTGATGATCCAAACCCAGTAATAGATGGAAGAAGAGCCAACTGTAATATTGCTTCTCTGGGACGTCCTCGACCTTCCCCACCCCGAGGGAAGAATACATTTCAAGGCGGAAGCACATCATCACAGAGTGGAGCATCGTACGGTGGCGCTCCGGCAGCGGTGCCTCCGCCTCCTCCACCTCCGGCGCCGGCGGGGCCTGGGCTGATGTACCCGCCATATGGATACTCTCCCTACTCTCCTGATTACGGCTACCACCAAGCGACACTGTACAACCCCCAGATTCAGCAGCCACAATACTACCAGCAAGTTTATGGAGCTTCATCATCAGGAGTGAGTTCCCCATATTACTACGGTTATTCAGTTCAGCCACCCAGAGCCTCTTATTCTACGCCCCAGGCTCATCGCCTGCCACCTGGACCCTCCTATCTGTACTACCCTTACCCTCCTTCACCACCTTCACCCGCACCCGCACCCCCACCACCAGTGGATCTCTCCTTCCCCGCTTATCGTCCCCCTCGACAACCCACACTGTTGAGGCAGCCCTCCACTCCCTCTATTGATTCACAGACTCAGCAGCGTACCTCCTCTGAGACGACGGCCGGAGTAGTGGTTACGGCGGCAGCTTCATCAGAGAGTCCGAGTACCCAAGGGAAAAACTAA 879 0.5415 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACDDPNPVIDGRRANCNIASLGRPRPSPPRGKNTFQGGSTSSQSGASYGGAPAAVPPPPPPPAPAGPGLMYPPYGYSPYSPDYGYHQATLYNPQIQQPQYYQQVYGASSSGVSSPYYYGYSVQPPRASYSTPQAHRLPPGPSYLYYPYPPSPPSPAPAPPPPVDLSFPAYRPPRQPTLLRQPSTPSIDSQTQQRTSSETTAGVVVTAAASSESPSTQGKN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00472 292 MobiDBLite consensus disorder prediction 222 241 - -
Accr4g00472 292 SUPERFAMILY RNA-binding domain, RBD 9 122 IPR035979 GO:0003676
Accr4g00472 292 MobiDBLite consensus disorder prediction 90 138 - -
Accr4g00472 292 MobiDBLite consensus disorder prediction 252 292 - -
Accr4g00472 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Accr4g00472 292 Gene3D - 3 111 IPR012677 -
Accr4g00472 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Accr4g00472 292 CDD RRM_RBM24_RBM38_like 16 91 - -
Accr4g00472 292 MobiDBLite consensus disorder prediction 124 138 - -
Accr4g00472 292 SMART rrm1_1 17 89 IPR000504 GO:0003723
Accr4g00472 292 MobiDBLite consensus disorder prediction 104 120 - -
Accr4g00472 292 PANTHER BOULE-RELATED 6 252 - -
Accr4g00472 292 MobiDBLite consensus disorder prediction 222 292 - -
Accr4g00472 292 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00472 Accr-Chr4 4575093 4578113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00472 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.12e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00472 K25006 - gmx:100787086 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00472 4 4575093 4578113 Accr4g00472 4 4575093 4578113 ECH