Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00450 ATGATGTCAGCTAACAGTAATCTGCAATTTCAACCGGATCCCTTCAACGGTGAGCTCATGGAAGCACTCGAGCCTTTTATGAAAAGTGCTTCCACAACGTCCGCACCCTCTCCGTACACTCCATCATCTTCTTCGAATTTATTTCTGCCTCCTCAACCTCCCTCTTCCAACTTCTTCCATTCCTCTCCTCCAGTCCCTACACAGCCCAATTGGTTTGCAGATGGTTACTCGCCATCGATGACCCATGTATTTTCCGACGGGTTATGCAGCAACCAAAACTTGATTGGTTTCGAGCAGCCAATTCTTCCTTTTGGGCTCAACAACCAGACTCTGTCTCAGACCGACCAGTTTCAACCTCAGATCCTTCACCAGAATCACCAAGACATGACCTTGCATCAAAATACCCTCAGCTTCTTGAGCCCCAAGCCTGTTCCCATGAAGCAGGTGGCTGCGCCTTCTAAGCCCACCAAGCTGTACAGAGGTGTCAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGCCTTCCCAAGAACCGGACCCGCCTCTGGCTCGGCACCTTCGATACTGCCGAAGAAGCTGCCCTCGCCTACGATAAGGCGGCTTTCAAGCTCAGAGGTGACTTTACCAGGCTTAACTTCCCCAACCTCCGTCACCAAGGTTCCAGTATTGAGGGAGAATTCGGGGAGTACAAGCCTCTACATTCCTCTGTAGATGCAAAGCTTCAAGCAGTTTGCGAAAACATGGCTGAAATGCAGAAACAGGGGAAGTCGGAGAAGCCAAAGAGGTCTTCAGGGCGGTCCAAGACAGGTTCCAAGGCCACTCAGCAGCAGACGGTAACGTTCTCGGACGAGCAGGCAGTGGCCAGCGAAGCTGATCTGAAGGTAGCGGAGAACTCTTACAACAAGGTGGATACTTCCTCGTCTCCGTTGATGACTGAGAGTGGCGAGTCTGGTGATTCATCTCCTCTGTTAGATTTGACATTCGGCGATGTCAGTGAGCCTCAGTGGGAAAGTATGGCAGAAACTTTTAATCTGCAGAAGTACCCTTCTGAGATTGACTGGGCATCACTATGA 1077 0.5116 MMSANSNLQFQPDPFNGELMEALEPFMKSASTTSAPSPYTPSSSSNLFLPPQPPSSNFFHSSPPVPTQPNWFADGYSPSMTHVFSDGLCSNQNLIGFEQPILPFGLNNQTLSQTDQFQPQILHQNHQDMTLHQNTLSFLSPKPVPMKQVAAPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGDFTRLNFPNLRHQGSSIEGEFGEYKPLHSSVDAKLQAVCENMAEMQKQGKSEKPKRSSGRSKTGSKATQQQTVTFSDEQAVASEADLKVAENSYNKVDTSSSPLMTESGESGDSSPLLDLTFGDVSEPQWESMAETFNLQKYPSEIDWASL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00450 358 MobiDBLite consensus disorder prediction 300 322 - -
Accr4g00450 358 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Accr4g00450 358 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Accr4g00450 358 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 MobiDBLite consensus disorder prediction 268 286 - -
Accr4g00450 358 MobiDBLite consensus disorder prediction 251 286 - -
Accr4g00450 358 FunFam Ethylene-responsive transcription factor 2 157 216 - -
Accr4g00450 358 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 358 - -
Accr4g00450 358 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 MobiDBLite consensus disorder prediction 300 330 - -
Accr4g00450 358 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Accr4g00450 358 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00450 Accr-Chr4 4341714 4342790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00450 2 358 AP2-EREBP Transcription Factor Family AT1G78080 50.524 9.60e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr4g00450 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00450 K09286 - qsa:O6P43_019667 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00377 3 4154477 4155526 Accr4g00450 4 4341714 4342790 CCT
Accr4g00450 4 4341714 4342790 Accr4g00450 4 4341714 4342790 ECH