Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00427 ATGAGTTCTCCATCAACTCAACTTGTCATCACAAAAAGGATGGGCATGGGCATACATGATCCATTCCAGCAAGTCGGCATGTGGGCGGACAACTTCAAAGTTGAAAATACCCTAAATCCAGGTCCTTCCCAAATATTCATGATGAACCCTACCACCGAGCCTAAGGATGAATATATTCCTCATGAATCAACTGGGCAGTCAGGAGATGATCAAGAGACCAACACTGCTGTTAGCAAGGTGCTAAGACGTTTAGCACAGAATCGTGAAGCAGCTCGAAAAAGTCGTCAAAGGAAAAAGGCTTATGTCCAACAATTAGAAACTAGCCGTTTGAAGCTCATGCAATTGGAGCTAGAGATTGAGAAAGCAAAAAAGCAGGGTCTGTATATGGGCGGGGCATTAGATGCTACTTATATTGGATCACCTGCAACAATAAACCCAGGGATTGCAACTTTTGAGATGGAATACAGTCAATGGGTTGAAGAGCAACACAGACAAAATGCAGAACTGAGAAACGCATTGCAAACTCAGTCATCTGATGTGCAGCTCGATCTACTGGTTCAGAGTGGCCTCAATCATTACTCAAATCTTTTCAGGATAAAAGCTGAAGCTGCAAATGCTGATGTCTTCTACTTAATCTCTGGTGTTTGGAAGGCATCCGTGGAACGTCTCTTCCTCTGGATTGGTGGATCCCGCCCATCTCAGCTTCTCACTATCATTGTGCCACAAGTGGAGGGTTTGACAGACGAACAGAAAGCGAGTTGCACCAAACTCCGGCAATCTTCTCAGCAAGCTGAAGATGCTCTTTCGCAAGGACTGGATAAACTACAGCAGAATCTGGTCCTCAACACGGCAGCCGACACATCAGATATAGGAAGCTTCGGGTTTCAGATGACTTCTCTCAAGGAGAAAATTGAAGCACTAGAAGGTTTTGTAAGCCAGGCAGACCACCTTCGACAACAAACCTTGGTGCATATGTCTCGGACCCTGTCGTCCCGGCAAGCAGCTCAAGGCTTGCTGGTTTTAGGCGAATACTTTCAGCGTCTTCGTGCTCTTAGCTCTCTTTGGTCAGCTCGTCCAAGCGATCCTGCGTTCCAAGCTTGA 1101 0.4614 MSSPSTQLVITKRMGMGIHDPFQQVGMWADNFKVENTLNPGPSQIFMMNPTTEPKDEYIPHESTGQSGDDQETNTAVSKVLRRLAQNREAARKSRQRKKAYVQQLETSRLKLMQLELEIEKAKKQGLYMGGALDATYIGSPATINPGIATFEMEYSQWVEEQHRQNAELRNALQTQSSDVQLDLLVQSGLNHYSNLFRIKAEAANADVFYLISGVWKASVERLFLWIGGSRPSQLLTIIVPQVEGLTDEQKASCTKLRQSSQQAEDALSQGLDKLQQNLVLNTAADTSDIGSFGFQMTSLKEKIEALEGFVSQADHLRQQTLVHMSRTLSSRQAAQGLLVLGEYFQRLRALSSLWSARPSDPAFQA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00427 366 Pfam bZIP transcription factor 79 109 IPR004827 GO:0003700|GO:0006355
Accr4g00427 366 Coils Coil 98 125 - -
Accr4g00427 366 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Accr4g00427 366 SUPERFAMILY Leucine zipper domain 79 112 IPR046347 GO:0003700|GO:0006355
Accr4g00427 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Accr4g00427 366 Gene3D - 78 127 - -
Accr4g00427 366 FunFam BZIP family transcription factor 78 127 - -
Accr4g00427 366 Coils Coil 159 179 - -
Accr4g00427 366 PANTHER TRANSCRIPTION FACTOR TGA9 2 360 - -
Accr4g00427 366 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
Accr4g00427 366 Pfam Seed dormancy control 167 240 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00427 Accr-Chr4 4114272 4116892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00427 1 362 Calmodulin-binding Proteins AT5G65210 51.213 3.64e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Accr4g00427 DOG1 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00427 K14431 - gmx:100775882 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00427 4 4114272 4116892 Accr4g00427 4 4114272 4116892 ECH