Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00417 ATGACCGGAGGCCAATGTCACCGGAGGAAGAAGATGAAGTGCAGGGTTGCGGAAGGAGGTTGTGGAACCGAGGACATGCCTTGCCCGGTTTCGAGGGTTCCGGTTAAATCCCTTGGGACCCAACCTGGAAATTCTGATAACTCCCTTGCACTTGATATTGATTACTACTCGCAGGCCATAAAAACGCTTAGTGAGCGCTCGCCTTTTGATGTCGCGGAAGATACTTCAACCTCGACGGTGCCCACACTGCCCAGTGGGTGCGCAAGCTTCTTAAACCGGCATTCTGAGAGTCGTAGGCGCCACAAGAAGTCCCATTCGGGTGCAGACAAGAAATCGTCTAGAACAAGTGAGAAGTCGCGTAGTTCAAGCTTCTGGGTGGAGACTGAGGATTACTTTAGAGACTTGAAATTGCCGGACATAGACACCTTGTTGGAGGCATCATCCCCTTTTAGTTTAGCTGCTCGAAATTGTTTTTCTATTCCACCAGTGGGAAATGATACAAAATCAAATGTAGCCAGTTACGAGGATGACAAGGAGACTGATGGAAACCTAAATAGCGAGGATGTTAAGAATGAGGACCGCGTCATGAAAAGTAACAGTGTTGTAGCTGGAGGCTTGGCTCAGGTTAACAAGGGTCATGATACTTTTGATTCGTCTAGTAGTTTAGAATGGCTTTTAGGGTGTAGGAATAAGAGTTCTCTGATTTCTGAGCCCCCTTCAAAGAGGAGGAAGCTTTTGGGCGGTGAAGCTGGGTTGGAGAAATTCTTTATGGCCGGTCCTTGCGATGGAGACTCTCCTCTGTGCCATTATTGCTGCCGGGGAGACACCGGTAGAGAGTCCAATAAATTAATTGTCTGCGTTATTTGTAAAGTTGCAGTTCATAAGAAGTGCTATGGTGTGCAAGATGATGTAGACGAGTCTTGGTTGTGCTCTTGGTGCAAGCAGAAGGATTGCGTTGATGAAATGGTGCATCCTTGTGTGCTTTGTCCAAAGAAGGGTGGTGCTTTAAAGCCTGTTCATAGACATGCTGAAAGTGTCGGGTCTGTGCAATTTGCCCACTTGTTTTGTTGTTTGTGGATGCCTGAGATTTATATAGAGGATCTGAAGAAGATGGAGCCTGTTATGAATGTAGGAGGAGTCCATGAAACCCGGAAAAAATTAGTCTGTGATATTTGCAAGGTGAAGTTTGGTGCGTGCATTCACTGTTGCCATGGATCTTGCAGGTCTTCTTTCCATCCTCTATGTGCTAGGGAAGCTAGCTACAGTATGGAGGTTTGGGCAAAAAACGATCATGACAATATTGAGTTGCGGGTCTTCTGTTCCAAGCACTCAGATGTACAAGAGAACAGCACCATCTTTTGTAGTGATTTGTCTTCTGCTGACAGCCTTCTGGGAGAAACACAGTGCATTTTGAAAACTGGTTGCCAGAATGGAGATAATATTGGGATATTTTCTGATGGCAGCCCTGATAAATTGAGTCATAGTGAATCACAGGATGGAATGCTGTCTGATTGTCTCTTAAATGCTCACAAAACGTCAGAATGCAGTGGTTTTCCACAACTAAGTAATACTGCAGTGGTGGGGAGGACCGATGAGATTGCCAATGCATCTGACTCCCTTAGTTTTGCACTTGTTTTGAAAAAGCTGATAGATCGAGGGAAAGTTGATCTAAAAAATGTGGCTTTGGAGATTGGCATTTCTTCAGAGACATTAAGCGCAAATATTAATGATCCTTGCATGGCCCCTGATGTGCAACTTAAAATAGTCAACTGGCTAAAAGCTCATATATCCAATTCCGAGTTGCCAGATCCAGTTGCTGTTAAGTCAGTGCCATCGAGGAGAAGAACAACTGGTAATATCAGAATTTTGAAAGATAACAAAGTGATATGTTCATCTGGGATGGCGTCCAGTGAGAACGAAATGCCAATGGACAAGGTCAAAGGAGGTCAATCTGAACATGAAAATTCCGAAATATCAAATGAAGCATCCATTCCTGATGCAGCTGAAATGGAATTAACCAAGTCTGAGTATGCTTGTTTTGATTCCCAAGGGAATGCTGATGAACCTAGCAAAATAAGCTTATCTGGAGGTGTTTTGGAAGAAAAGATTGCTAATGCTTCTATTTTTTCTGATCACCACCATTCTTGTGCTGCTGCAGATTTACCTCCTTCTGGTGTTATGAAGATTGAAGGAAACCCTTGTTACATTCACCCATACATCCATAAAAAGTTATCGCAGATTCATGGTGGGGTGCTTTCAAAGGATGTTTTATGTCAAAGGGAGGAACAAAATTTTTATTTGGATGATTGCTTAGGGGCTAGTAGTGGCTCTAGTTACCAAAATCCAGAAGTAACTTCCAGTGACATTTGTAAGGCTGATAAAGTAAATACGAAGCAATTGGTTATGGCTAGAAATATGGGTTTATTAGAATCTTGTCCAAAAGATGAAGTGGATGGTGAACTGATATATTTTCAGCATAGGTTATTGCAAAATTCAGTTGCAAGGAAGAAGTTTGCTGACAACTTAATCTCTAGTATAGTTAAGAGTCTTCCGCAGGAGATTGATGCAACACACCAGCAAAGATGGGATGCTGTACTTGTTAACCAGTACCTCCGTGATCTTAGGGAAGCAAAAAAGCAGGGCAGAAAAGAGAGAAGGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCAGCATCATCATCTAGGGTTTCTTCCTTGCGGAAGGATGCCTTTGAAGAACCTGTACAACCAGAGAATTTGTTAAAGCACACTTTCAGTGGAAGGACTGGGGTTTGCTCTCTGCCAATGCCGCGGGCCAAAGAAACACCCTCAAGAGTAGCTATGGTTAGGATATCATCAGAGAAACATTCAGATTTTGGCATTGGAAATGCAGATTTTTCTAAGGAGCATCCCAAATTATGTGATATCTGTAGACGATCTGAAACTATATTGAACCCAATACTCGTCTGCTCCGGTTGCAAGGTTGCTGTTCACTTGGATTGCTATCGTAGTGTGAAGGAATTCACAGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATTTAGAATATCTGGACAGCCTTCTATAAATTCCTGGGAGAAACCTTATTTTGTTGCGGAATGTGGGATATGCGGCGGTACTACTGGTGCTTACAGGAAGTCTTCAGATGGTCATTGGGTCCATGCCTTTTGTGCTGAGTGGATTTTTGAGTCTACTTTCAGAAGAGGACAAGTAAATGCTGTTGAAGGAATGGAAACTGTGTTGAAAGGAGTAGACACTTGTTGCATCTGTCACCGCAAGCATGGTGTATGCTTAAAGTGTAGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTTTACATGAATGTGAGGGCTGCCAGCGGTAAGCTGCAGCACAGGGCTTACTGTGAAAAGCATGGTTCAGAACAGAGGGCAAAGGCTGAAAGCCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAGTTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAGAAGATAAAGCGGGAATTGGTTCTATGTTCACATGACATACTAGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTCTTGGTGCATAGCCCTTTCATACTTCCTGATTGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAAGCTGTCCAAAGGTCAGATGATGTAACTGTGGACAGCTCGGTTTCTGCCAAGCATCGAGTACGAGTTGCTGTTACCATGGACAGTGATCCAAAGTTGGATGACGACTGCTCAACTTCGCAAAGCCATTATAATAATAAGATTCCTGAGAGGGCGCAGTTTTCTGGCAAGCAGATTCCTCATAGAGCTTCCATCATATCACGGAATCTTTCGGATGACAGCGGATGGAGATCAAAATCAAGAAAGCATCAAGAGGCATTTGGAAAAGAGCTGGTTATGACGTCAGACGAAGCATCGATGAAGAATTCAATGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCTAATGATAAGCGATCCAAGCAGGATGTATTTACTAGCGAACCAGCGGAGCACAATGGGTGA 4161 0.4343 MTGGQCHRRKKMKCRVAEGGCGTEDMPCPVSRVPVKSLGTQPGNSDNSLALDIDYYSQAIKTLSERSPFDVAEDTSTSTVPTLPSGCASFLNRHSESRRRHKKSHSGADKKSSRTSEKSRSSSFWVETEDYFRDLKLPDIDTLLEASSPFSLAARNCFSIPPVGNDTKSNVASYEDDKETDGNLNSEDVKNEDRVMKSNSVVAGGLAQVNKGHDTFDSSSSLEWLLGCRNKSSLISEPPSKRRKLLGGEAGLEKFFMAGPCDGDSPLCHYCCRGDTGRESNKLIVCVICKVAVHKKCYGVQDDVDESWLCSWCKQKDCVDEMVHPCVLCPKKGGALKPVHRHAESVGSVQFAHLFCCLWMPEIYIEDLKKMEPVMNVGGVHETRKKLVCDICKVKFGACIHCCHGSCRSSFHPLCAREASYSMEVWAKNDHDNIELRVFCSKHSDVQENSTIFCSDLSSADSLLGETQCILKTGCQNGDNIGIFSDGSPDKLSHSESQDGMLSDCLLNAHKTSECSGFPQLSNTAVVGRTDEIANASDSLSFALVLKKLIDRGKVDLKNVALEIGISSETLSANINDPCMAPDVQLKIVNWLKAHISNSELPDPVAVKSVPSRRRTTGNIRILKDNKVICSSGMASSENEMPMDKVKGGQSEHENSEISNEASIPDAAEMELTKSEYACFDSQGNADEPSKISLSGGVLEEKIANASIFSDHHHSCAAADLPPSGVMKIEGNPCYIHPYIHKKLSQIHGGVLSKDVLCQREEQNFYLDDCLGASSGSSYQNPEVTSSDICKADKVNTKQLVMARNMGLLESCPKDEVDGELIYFQHRLLQNSVARKKFADNLISSIVKSLPQEIDATHQQRWDAVLVNQYLRDLREAKKQGRKERRHKEAQAVLAAATAAAASSSRVSSLRKDAFEEPVQPENLLKHTFSGRTGVCSLPMPRAKETPSRVAMVRISSEKHSDFGIGNADFSKEHPKLCDICRRSETILNPILVCSGCKVAVHLDCYRSVKEFTGPWYCELCEDLSFRISGQPSINSWEKPYFVAECGICGGTTGAYRKSSDGHWVHAFCAEWIFESTFRRGQVNAVEGMETVLKGVDTCCICHRKHGVCLKCSYGHCQTTFHPSCARSAGFYMNVRAASGKLQHRAYCEKHGSEQRAKAESQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFILPDCSSESATTSLKGNTEGYRSCSEAVQRSDDVTVDSSVSAKHRVRVAVTMDSDPKLDDDCSTSQSHYNNKIPERAQFSGKQIPHRASIISRNLSDDSGWRSKSRKHQEAFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKRSKQDVFTSEPAEHNG 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00417 1386 CDD ePHD 1046 1151 - -
Accr4g00417 1386 ProSitePatterns Zinc finger PHD-type signature. 978 1021 IPR019786 -
Accr4g00417 1386 MobiDBLite consensus disorder prediction 67 92 - -
Accr4g00417 1386 ProSiteProfiles Zinc finger PHD-type profile. 975 1024 IPR019787 -
Accr4g00417 1386 ProSiteProfiles Extended PHD (ePHD) domain profile. 1043 1152 IPR034732 -
Accr4g00417 1386 SUPERFAMILY FYVE/PHD zinc finger 965 1022 IPR011011 -
Accr4g00417 1386 ProSiteProfiles Zinc finger PHD-type profile. 265 316 IPR019787 -
Accr4g00417 1386 MobiDBLite consensus disorder prediction 634 662 - -
Accr4g00417 1386 ProSiteProfiles Extended PHD (ePHD) domain profile. 323 444 IPR034732 -
Accr4g00417 1386 MobiDBLite consensus disorder prediction 67 120 - -
Accr4g00417 1386 Coils Coil 871 891 - -
Accr4g00417 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1043 1154 IPR013083 -
Accr4g00417 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 446 IPR013083 -
Accr4g00417 1386 SUPERFAMILY FYVE/PHD zinc finger 259 315 IPR011011 -
Accr4g00417 1386 ProSitePatterns Zinc finger PHD-type signature. 268 313 IPR019786 -
Accr4g00417 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 956 1027 IPR013083 -
Accr4g00417 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 322 IPR013083 -
Accr4g00417 1386 Coils Coil 1172 1192 - -
Accr4g00417 1386 PANTHER PHD FINGER PROTEINS 76 914 - -
Accr4g00417 1386 SMART PHD_3 388 444 IPR001965 -
Accr4g00417 1386 SMART PHD_3 267 314 IPR001965 -
Accr4g00417 1386 SMART PHD_3 977 1022 IPR001965 -
Accr4g00417 1386 SMART PHD_3 1098 1152 IPR001965 -
Accr4g00417 1386 Pfam PHD-finger 989 1022 - -
Accr4g00417 1386 Pfam PHD-finger 281 314 - -
Accr4g00417 1386 Pfam PHD-zinc-finger like domain 1045 1151 - -
Accr4g00417 1386 Pfam PHD-zinc-finger like domain 325 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00417 Accr-Chr4 4011538 4022595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00417 262 448 C2H2 Transcription Factor Family AT3G14740 30.526 5.97e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr4g00417 zf-HC5HC2H_2 1.8e-21 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00417 - - gmx:100775631 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00417 4 4011538 4022595 Accr4g00417 4 4011538 4022595 ECH