LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g00410	ATGGCGCAAACGCTAGCAATGCCTGTGGCACCTTCTCTATCTGTTATTTGCGATACTCACGCTTCAACTTCGCTTTCAAGGAGCGTCTCTTTCCGATTCTCGACCCCTCCCAAGGTTCAAGGTCTAAGCATCCAATGTGTTCGTGTTGGAGGTGTGGAGATCCCAAACAACAAGCGAATTGAGTTCTCACTCCAGTATATACATGGAGTTGGACGGAGCAGAGCTCGAAAAATCCTGTGCGACATAAACATGGACAACAAAATCACAAAGGACTTGAATGAGGAGGAACTCATCACTCTGAGAGATGAGGTCTCCAAGTACGTGATTGAAGGCGACTTGAGGAGGTTCAATGCACTTAATATAAGGAGATTGAAGGAGATCCAATGCTACAGAGGGATCAGACATATTCAGGGGCTGCCGTGCAGAGGACAACGCACGAAGAACAATTGCCGGACCTTGAAGGGGAAGAAGGTCACCATTGCAGGAAAGAAGAAGAAGTAA	501	0.4711	MAQTLAMPVAPSLSVICDTHASTSLSRSVSFRFSTPPKVQGLSIQCVRVGGVEIPNNKRIEFSLQYIHGVGRSRARKILCDINMDNKITKDLNEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKK	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g00410	166	FunFam	30S ribosomal protein S13	116	165	-	-
	Accr4g00410	166	Pfam	Ribosomal protein S13/S18	48	152	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Accr4g00410	166	SUPERFAMILY	S13-like H2TH domain	47	158	IPR010979	GO:0003676
	Accr4g00410	166	Gene3D	30s ribosomal protein s13, domain 2	116	166	IPR027437	-
	Accr4g00410	166	ProSiteProfiles	Ribosomal protein S13 family profile.	49	155	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Accr4g00410	166	NCBIfam	30S ribosomal protein S13	48	157	IPR019980	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Accr4g00410	166	Gene3D	-	47	115	-	-
	Accr4g00410	166	Hamap	30S ribosomal protein S13 [rpsM].	46	162	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Accr4g00410	166	ProSitePatterns	Ribosomal protein S13 signature.	131	144	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Accr4g00410	166	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	42	164	-	-
	Accr4g00410	166	FunFam	30S ribosomal protein S13	42	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g00410	Accr-Chr4	3939541	3940734	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g00410	45	164	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	30.822	2.93e-07	45.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g00410	K02952		-	tcc:18592264	261.536

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr4g00410	4	3939541	3940734	Accr4g00410	4	3939541	3940734	ECH