Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00404 ATGAGCAAACCCAGAAGCCAAAAGAAAGAATCCAAACATGTCAACCGAAAGCAGAATCAACAACCACCCCAGAAAACAGAGAAGCAGGCCTCCTGGGCAACGATAAGAGGCCTATTGCCTTGTAGAAGTGTCCAAATTCAGCAGCCGCAGCTGGAAGTGAAACAACCAAAACAGAAACAAGAGCCAAGGAAGCTACAAGAACAAGAGGAAGAAGAAGAAGAAGCAGTCACAGAAGAAAGCAGAAAGAAGTGCAAGAAAATGAGATGTTCTGGTTCACTCTGTAATAACACCAAGATCGTGGCAAAGCCTGAAACAGTGTCTCTTGACATGAACAACCTCAAAAGGGCGTCGTCTCTGAGTGCAAGTAATACGGCCAACAACGATGCTTCTCATTCTAACAGATCCTTGAAGGCTCCTTTGAATGAACTGAATGGGGTGGTTACTTCTGCTTCTTCTTCAAACTCTTCTGTGAACGGTTCTTTTAGGGGAATGCCATTTAGGAGGTTCTCTGGTTGCTATGAGTGTCGTATGGTGGTTGACCCTTTTCTTCCTTTCACTAGAGACCCTTCTCTAAGGAGTAGCATTTACCCTTGCTCTCACTGTGGTGAGATCTTCATGAAACCTGAGAATTTAGAGCTTCATCAGGCTGTTAAACATGCAGTATCTGAACTGGGTCCAGAAGATACAAGCAAGAACATAGTGGAGATTATATTCCACTCAAGCTGGCTAAAAAAACAATCTCCAGTCTGCAAAATAGACCGCATCCTTAAAGTCCACAACACACAGAGGACAATAACCAAATTTGAAGAGTACAGAGAGTCCATCAAAGCCAAAGCTATGAAGCTTCCCAAGAAGCATCCTCGTTGCATAGCAGATGGAAACGAGCTATTGAGGTTTCATTGCACGACCTCTTTGTGCTCACTGGGCCTAAAAGGCTCCACTACCCTCTGTAACTCAACACCACAGTGCAAAGTGTGTGGCATAATCAAGAATGGCTTCAAGGTGGTGGCCGGCGGAAAAGAGATATTGACGACGGCGACAAGTGGGAAAGCACACGACAGAGCAGAGGTTTCAGGTGACGAGAATAATGAGAAGAGAGCAATGCTGGTATGCAGGGTAATAGCAGGGAGGGTGAAGAAGAATACAGAAGGAGGAGGAGGAATAATAAGTACAGAGGAGTATGATTCTTTTGCAGGGGAAGTTGGGGCTTATTCCAATTTAGAAGAGTTGTATGTGTCCAATCCTAGAGCTATTTTGCCCTGTTTCGTTGTTTTTTACACTGGTTTTTGA 1290 0.4442 MSKPRSQKKESKHVNRKQNQQPPQKTEKQASWATIRGLLPCRSVQIQQPQLEVKQPKQKQEPRKLQEQEEEEEEAVTEESRKKCKKMRCSGSLCNNTKIVAKPETVSLDMNNLKRASSLSASNTANNDASHSNRSLKAPLNELNGVVTSASSSNSSVNGSFRGMPFRRFSGCYECRMVVDPFLPFTRDPSLRSSIYPCSHCGEIFMKPENLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTITKFEEYRESIKAKAMKLPKKHPRCIADGNELLRFHCTTSLCSLGLKGSTTLCNSTPQCKVCGIIKNGFKVVAGGKEILTTATSGKAHDRAEVSGDENNEKRAMLVCRVIAGRVKKNTEGGGGIISTEEYDSFAGEVGAYSNLEELYVSNPRAILPCFVVFYTGF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00404 429 MobiDBLite consensus disorder prediction 17 31 - -
Accr4g00404 429 MobiDBLite consensus disorder prediction 1 33 - -
Accr4g00404 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 86 426 - -
Accr4g00404 429 ProSitePatterns Zinc finger C2H2 type domain signature. 198 219 IPR013087 -
Accr4g00404 429 MobiDBLite consensus disorder prediction 1 16 - -
Accr4g00404 429 MobiDBLite consensus disorder prediction 56 82 - -
Accr4g00404 429 MobiDBLite consensus disorder prediction 50 82 - -
Accr4g00404 429 SUPERFAMILY ADP-ribosylation 221 428 - -
Accr4g00404 429 Gene3D - 220 427 - -
Accr4g00404 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 224 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00404 Accr-Chr4 3877981 3887768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00404 161 426 C2H2 Transcription Factor Family AT1G75710 53.425 3.06e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g00404 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00404 - - cave:132168016 540.421