Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00387 ATGTCTCTGAGCCCTCCTCGGCGAAGGACTAATGGCGAAGCCAGGACGAACCTGGTGTACTGGTGCTACCAGTGCAACCGAATGTTCCGTCTCCCTTCCACAGACTCAACGGATATTGCTTGCCCCCTTTGTTCAGGCCATTTCGTCAGTGAAGTCAACGTATCAAGGCCAAGACTAGTCTTGGATTTTACCGACCCCGATCCATCACCGGAAGCCCGTTTGCTAGAAGCCCTTTCTTTGTTGTTTGACCCGCCAATTAGGCAGTTTGATGGCCGTCTCCACGATCCCCAATCTCAACCTCCACGCTTCCGTTGGATTCAGGCCCGAGAGCGATCACGCCCACAAGATGGCAGACGTCATGCCGACTCCGACGGTGAAATCCCCGTCCGTCGCGTACCTGGTCGGCGACGTCGCCGGGATCGTGATCTCGACGCAGATGTTCCAGAACCTGAAATTCTCCCTCGTCCTCGGACTTGGCTAATTCTTCCACCGATCGATCCGTCTTACCCATTGGAATTGATCCCGCGGGGGCGAATCCCTATACCGCGCGGTGTTGACCCGAGAGACTACTACTTTGGTCCTGGTTTGGGGGAACTTATTGACCAGCTGACGGAAAATGACAGGCCGGGGGCACCACCGGCGCCGGAGAGAGCTATCAATGCGATTCCAAGTGTGAAAATCTCGGAGAGCCATCTGAAGGAGAACTCGTACTGCCCGGTCTGCCAGGAAGAATTTGAACTGGGCGGTGATGCAAGGGAATTGCCATGCAAGCACATATACCATTCGGATTGCATTGTTCCGTGGCTAAGGCTTCACAATTCTTGTCCTGTTTGCCGGCTTGAGGTGCCGGTGCCAGAATCTTCCGACTCCGTTGAAGACAGTGGTGGAGAAGGCAGGCTGCGTAGGTGCTTGAGATGGAGCCGAATTCAACTGGCTTCTTTGTGGCCTTTCCACGGAAGGCATCAACGTATTCGTCCAGAAGCAGAGAATAATGTAATTGCTTCTGCAACGGGAGATCGTGCAGGGCGGATCCCGTGCTGTATTCTTTAG 1050 0.5438 MSLSPPRRRTNGEARTNLVYWCYQCNRMFRLPSTDSTDIACPLCSGHFVSEVNVSRPRLVLDFTDPDPSPEARLLEALSLLFDPPIRQFDGRLHDPQSQPPRFRWIQARERSRPQDGRRHADSDGEIPVRRVPGRRRRRDRDLDADVPEPEILPRPRTWLILPPIDPSYPLELIPRGRIPIPRGVDPRDYYFGPGLGELIDQLTENDRPGAPPAPERAINAIPSVKISESHLKENSYCPVCQEEFELGGDARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVPESSDSVEDSGGEGRLRRCLRWSRIQLASLWPFHGRHQRIRPEAENNVIASATGDRAGRIPCCIL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00387 349 SUPERFAMILY RING/U-box 218 285 - -
Accr4g00387 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 283 - -
Accr4g00387 349 Pfam Ring finger domain 237 279 IPR001841 -
Accr4g00387 349 MobiDBLite consensus disorder prediction 106 149 - -
Accr4g00387 349 FunFam E3 ubiquitin-protein ligase RING1-like 202 285 - -
Accr4g00387 349 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Accr4g00387 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 285 IPR013083 -
Accr4g00387 349 MobiDBLite consensus disorder prediction 89 149 - -
Accr4g00387 349 CDD RING-H2_RNF126-like 238 279 - -
Accr4g00387 349 SMART ring_2 238 278 IPR001841 -
Accr4g00387 349 Pfam zinc-ribbon 20 51 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00387 Accr-Chr4 3692151 3693445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00387 210 317 C3H Transcription Factor Family AT1G68180 41.667 2.23e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00387 K11982 - qsa:O6P43_015206 389.808