Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00351 ATGGAACCAGAAAAGGGCAAACAGTCTTCCCACAAAACCCCATACACTGAACTCGAGCAAGTTAACTCAGATTTCATCCTGGCAATCGCTTTGCAAGAGCAAGAGGGAACCTTCACAATGCTCACCACCATGGACAGCGAAGAAAGCAGCAATGAAGATGTAAGTGAGTCCTCTTTTGAAGACGACGTTGAAGATGGAGATGCTGATGACTTTTCCGAGGGCCAAGAATTCGAATTAGGAGACGTTCAGCTTCTTGAGGGCGAAGGAAGCAATGACGATGACGATGAAGAAATGGAAGAAGAGGAGGATGAGATTGATCCTGATGAAATGTCCTACGAAGAGTTGATTGAGTTGGCTGAGTTCGTAGGAGAAGAAAGAAGAGGACTGTCACCAAATGAAATCCCTTCATGCCTTCATCCTTACACTTGCCACTTTGCAGAAAACAAGACAGGAACAGATCGGTGTGTGATATGTCAGGTTGAGTATGAAGAAGGTGAGGCACTCATGGCGCTTCCTTGTGAGCACCCTTATCATTCAGATTGCATAACAAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAGCTGTGAAGTCTCCCCTCCAAAACTGGCTAACAACGTCCCTTGA 630 0.4524 MEPEKGKQSSHKTPYTELEQVNSDFILAIALQEQEGTFTMLTTMDSEESSNEDVSESSFEDDVEDGDADDFSEGQEFELGDVQLLEGEGSNDDDDEEMEEEEDEIDPDEMSYEELIELAEFVGEERRGLSPNEIPSCLHPYTCHFAENKTGTDRCVICQVEYEEGEALMALPCEHPYHSDCITKWLQIKKVCPICSCEVSPPKLANNVP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00351 209 MobiDBLite consensus disorder prediction 87 108 - -
Accr4g00351 209 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Accr4g00351 209 SUPERFAMILY RING/U-box 154 202 - -
Accr4g00351 209 Pfam Ring finger domain 154 195 IPR001841 -
Accr4g00351 209 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
Accr4g00351 209 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 100 IPR043312 -
Accr4g00351 209 MobiDBLite consensus disorder prediction 49 76 - -
Accr4g00351 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Accr4g00351 209 SMART ring_2 155 195 IPR001841 -
Accr4g00351 209 MobiDBLite consensus disorder prediction 40 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00351 Accr-Chr4 3434522 3435151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00351 56 199 C3H Transcription Factor Family AT3G63530 44.218 7.23e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00351 K19045 - gmx:100526881 249.98