LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g00344	ATGAGTTTCCTGAGGCCCTCAGCATTGTACGCCTTTCTTATTACATGTCCTTCCTTCAGATGGATGCCTTGTCAGAGTTGGGGCTTTCTTCGATGGCCCGGTTTCGATGGCTTCTTGAGACTTTTGGTGATGTTCCTTCTCTGGACCATGTTTTTGGAGCTCCGCTTCATACCTTCATCCTCTATGCACCCGACTCTTACAGTTGGTGATCGAATCATTGTCGAGAAGGCTTCGTATTACATCAGGAGTCCTGCCGTACAGGATATTGTATTATTCCGAGATCCAACAAAGCCATCTGGAGACAAAGCAGCAGATATTTGTATCAAGAGAGTTGTTGCAAAAGCAGGAGATCTTGTTGAGGTCCGTCATGGGTCTCTCTACATCAATAGAGTTGCTCGGAAGGAAGATTATGTGGCAGCACAGCCAACATACACAACAAACTTAACTTATGTACCAAACGGCCATGTTTATGTGTTAGGTGACAATCGAAACAACAGCTACGATTCCCATGTTTGGGGACCACTGCCTGTGAAAAACATAGTGGGGAGATATGTCATGCGTTGTCACAAACCCACAAACATCTGA	585	0.453	MSFLRPSALYAFLITCPSFRWMPCQSWGFLRWPGFDGFLRLLVMFLLWTMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIRSPAVQDIVLFRDPTKPSGDKAADICIKRVVAKAGDLVEVRHGSLYINRVARKEDYVAAQPTYTTNLTYVPNGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVMRCHKPTNI	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g00344	194	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Accr4g00344	194	SUPERFAMILY	LexA/Signal peptidase	49	188	IPR036286	-
	Accr4g00344	194	Pfam	Signal peptidase, peptidase S26	39	187	IPR019533	GO:0004252\|GO:0006465
	Accr4g00344	194	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Accr4g00344	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr4g00344	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr4g00344	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr4g00344	194	Gene3D	Umud Fragment, subunit A	59	190	-	-
	Accr4g00344	194	FunFam	Peptidase/ serine-type peptidase	59	188	-	-
	Accr4g00344	194	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016020
	Accr4g00344	194	PANTHER	SIGNAL PEPTIDASE I	37	192	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Accr4g00344	194	NCBIfam	signal peptidase I	39	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g00344	Accr-Chr4	3367942	3371366	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g00344	59	188	MADS-box Gene Family	AT1G29960	31.538	4.29e-10	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g00344	K03100		-	jre:109003047	306.99

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr4g00344	4	3367942	3371366	Accr4g00344	4	3367942	3371366	ECH