Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr4g00336 | ATGCTGCGGACGAATGCATTCGAAGGCGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCGGAAGTCTTCGACACACTTCACGACGCGCTTAAGAATAACGGCGCACGTGTCCACCTCTGCTGCGACCCTTCGCGCAATGGGCCTCACGACTATCACATCATATCTCACGATCATGAGAAACTTGAAGATCTTAAAGCCCGAGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACCTCTGCCTAAACAGGGTTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATGGATGAGAAGATGAAGATAGGAGAGTTGGTAAATTCTATGGGAGGAATTCTGCATACTAAAGCTTCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCCAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAATCACTTTTAATTGGTTAAAGCAATGCTCTATTGAGCATCGTATTGTTCCTCAAGAGTCATACAGGATTCTTCCCTTTTCTGGCTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGAAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCAGAGCTAACAAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGCGACAAATATAGGGTAGCGAAACGATGGGGTCACATTCATATTGTGACAAAGAAATGGTTTGATCAGTCTATTGCCAGAAGAGCATATCTGAATGAGGAGTCCTACCCTGTTCAGCATGGACCTGTATCTTCACAAAGAATGTCTATCGATAATTTAACAGCACAACATAGTCAGGAAATGAAATATGGGAAATTGCAATCTGCAGCATCATCTGGACTTCCAGATTCATGTATGCCTGTTTCCTATGCTGAGCTTGTGGACGGAGATCCAGATGCTACACAGTCAGAAAACACTTCTGCTGCCATTTTAGATGTTCCTATCTCTGTTAACGGGACAGATCCTGAAGTGCCTCCAGTGCAACCCAAAAATGAACCAAACCTTGACAGTGCTGTAGCCAGAGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCCGAATTTCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAACTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAATGACAAGTTGACTCACATAATCATTGGAACCCCTTCGGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTTTGGGTATCATCTACGTTGTTAAGACTACATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAAGAGACACATTGCGCTTGATCTTCTTCTTCCAAAAGGTTCAGCATCTTTTGTGAAAGGAGCTGTAACCGGCATTATGGGCATGAATAAGAGTAAATGCCCCAGCACTCATCCAAGCTTGCAAGCTGATCCGGTGATTACTGGTATGGACTCTAGAGTTGTAATGCCATTATCTGTGGAGAAAAAAGAACAGAAGAAGCCAGAGATTGATGTGACTGATCAAACCTTTCTTAAATCAATGGACAAGTCAACACAGCAAACGCAACTTCCTTTCGTTAATAATAAAATGAAGGCTCAAAAGAAGATGCATAATGAATCTTCTCAGTGTGCAAAGTCATCAACAGTTTTCTGGGGAAGGACGTTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAATCAAGGGAAAGGAGAAATGGTAAATGGGCACAGAAAACAGAATGCCCATTATACTATTGAGTGTCATGGTGTAACAAGGAGGTTGGAAGAAATTTCCCAAACTACATATATTTCCAGTCATTGGATACGATCTTGCTTAGAGAATGACTGCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTCCCTTGCTGTATACCCTTGCCTGGGTTTGAGGGCTTTCGGTTTTGTGTTTCTCAATACAAGGGGAGAGACAGAATACTGCTAAGGAACTTGTGCTTTGTTCTTGGAGCTACATTTGTGGAGAAGTTGACGAAGAAAGTTACTCATTTATTTTGTAAATTCATCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAGGCGGTTACATCTGAATGGATATTTGAATGTGTCAAAGAGAATAAAGTTGTTGCTGTTGATCAATTTTTACCCAAAGAAGTCTCTGTTCAAGATCAAGAGAACCAAGAGGCAGAAGTTTTTACTGTGAGTCAATATCCTAGCCCGGCTGACAGCATTAGTGGAGATGGCTCTGCCCAGTATTCAAGTCGATCAAAAAATTTGAGAAACATACCGAATCAGAATGTAGGTAGTCAAATCAACAACTTCGGGGTTGATGCTAAAATATCAAGTGCTTACTGCAAAAAGGCAAGGCTTTTGGAAGAGTCTGGCCTGTACGATACAGTGCCTTCTGCCATAGCCTCAGCTACCCCTATCAGCACTATGAGTTCTACAGGAAACAATATGCTGATAGATACCAGCGAGGTTTCCCCGGCTGTTCCTGATGTTGCTGCTGCTATTGAGGGCTTGTTAGAGGAAACTAGCAAGATGCATGATCAGACATCCCCAGGGAAAACCGTGAATAAGGGAAATAATTTTTCGTCTGCTTGTTCTGTTCTCGGTGAAAACCAATCAAATCCTCACACTGCCATTGGATTTTCCGAACACTGGCTGAACAGAAGTAGCAGAAACGAGGATAATGATGATGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACGCAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTCATCGACAGAGTCCGTACACGTGGTAGCATGGCTTGA | 2955 | 0.4206 | MLRTNAFEGANVFMSRNLVPPEVFDTLHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKMKIGELVNSMGGILHTKASLDVNFVIVKNVLAAKYKWALNMLKKPIITFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKKCTHLISDAPEGDKYRVAKRWGHIHIVTKKWFDQSIARRAYLNEESYPVQHGPVSSQRMSIDNLTAQHSQEMKYGKLQSAASSGLPDSCMPVSYAELVDGDPDATQSENTSAAILDVPISVNGTDPEVPPVQPKNEPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIIIGTPSEIEKKDVRSLAALGIIYVVKTTWLEDCDREKKEVPVLKRHIALDLLLPKGSASFVKGAVTGIMGMNKSKCPSTHPSLQADPVITGMDSRVVMPLSVEKKEQKKPEIDVTDQTFLKSMDKSTQQTQLPFVNNKMKAQKKMHNESSQCAKSSTVFWGRTFCFSNSFPEERRDEIIQWINQGKGEMVNGHRKQNAHYTIECHGVTRRLEEISQTTYISSHWIRSCLENDCLLDVDSHILYSPLPCCIPLPGFEGFRFCVSQYKGRDRILLRNLCFVLGATFVEKLTKKVTHLFCKFINGPKYEAACKWGIQAVTSEWIFECVKENKVVAVDQFLPKEVSVQDQENQEAEVFTVSQYPSPADSISGDGSAQYSSRSKNLRNIPNQNVGSQINNFGVDAKISSAYCKKARLLEESGLYDTVPSAIASATPISTMSSTGNNMLIDTSEVSPAVPDVAAAIEGLLEETSKMHDQTSPGKTVNKGNNFSSACSVLGENQSNPHTAIGFSEHWLNRSSRNEDNDDASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRGSMA | 984 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr4g00336 | 984 | ProSiteProfiles | BRCT domain profile. | 99 | 183 | IPR001357 | - | |
| Accr4g00336 | 984 | MobiDBLite | consensus disorder prediction | 341 | 371 | - | - | |
| Accr4g00336 | 984 | FunFam | Transcription coactivator | 568 | 665 | - | - | |
| Accr4g00336 | 984 | SUPERFAMILY | BRCT domain | 370 | 458 | IPR036420 | - | |
| Accr4g00336 | 984 | ProSiteProfiles | BRCT domain profile. | 571 | 659 | IPR001357 | - | |
| Accr4g00336 | 984 | ProSiteProfiles | BRCT domain profile. | 672 | 755 | IPR001357 | - | |
| Accr4g00336 | 984 | SUPERFAMILY | BRCT domain | 573 | 661 | IPR036420 | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 45 | 93 | IPR036420 | - | |
| Accr4g00336 | 984 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 8 | 982 | - | - | |
| Accr4g00336 | 984 | CDD | BRCT | 102 | 169 | - | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 96 | 173 | IPR001357 | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 669 | 745 | IPR001357 | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 183 | 260 | IPR001357 | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 4 | 85 | IPR001357 | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 374 | 454 | IPR001357 | - | |
| Accr4g00336 | 984 | SMART | BRCT_7 | 573 | 649 | IPR001357 | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 185 | 271 | IPR036420 | - | |
| Accr4g00336 | 984 | FunFam | Transcription coactivator | 354 | 464 | - | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 568 | 665 | IPR036420 | - | |
| Accr4g00336 | 984 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 573 | 656 | IPR001357 | - | |
| Accr4g00336 | 984 | SUPERFAMILY | BRCT domain | 58 | 183 | IPR036420 | - | |
| Accr4g00336 | 984 | Pfam | BRCA1 C Terminus (BRCT) domain | 100 | 169 | IPR001357 | - | |
| Accr4g00336 | 984 | Pfam | BRCA1 C Terminus (BRCT) domain | 374 | 450 | IPR001357 | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 358 | 461 | IPR036420 | - | |
| Accr4g00336 | 984 | ProSiteProfiles | BRCT domain profile. | 372 | 464 | IPR001357 | - | |
| Accr4g00336 | 984 | MobiDBLite | consensus disorder prediction | 930 | 946 | - | - | |
| Accr4g00336 | 984 | SUPERFAMILY | BRCT domain | 668 | 756 | IPR036420 | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 669 | 777 | IPR036420 | - | |
| Accr4g00336 | 984 | FunFam | Transcription coactivator | 96 | 184 | - | - | |
| Accr4g00336 | 984 | MobiDBLite | consensus disorder prediction | 930 | 960 | - | - | |
| Accr4g00336 | 984 | SUPERFAMILY | BRCT domain | 185 | 271 | IPR036420 | - | |
| Accr4g00336 | 984 | CDD | BRCT_TopBP1_rpt2_like | 185 | 260 | - | - | |
| Accr4g00336 | 984 | ProSiteProfiles | BRCT domain profile. | 186 | 270 | IPR001357 | - | |
| Accr4g00336 | 984 | FunFam | DNA topoisomerase II binding protein 1 | 186 | 278 | - | - | |
| Accr4g00336 | 984 | Pfam | twin BRCT domain | 189 | 252 | IPR001357 | - | |
| Accr4g00336 | 984 | Pfam | twin BRCT domain | 676 | 737 | IPR001357 | - | |
| Accr4g00336 | 984 | Gene3D | BRCT domain | 97 | 184 | IPR036420 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr4g00336 | 1 | 984 | Core DNA Replication Machinery Family | AT1G77320 | 50.000 | 0.0 | 927 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr4g00336 | K10728 | - | qsa:O6P43_015132 | 1263.83 |