Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00331 ATGGGAAGAGGAAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTGACCTACTCAAAGAGGAAGAATGGGATCCTGAAGAAGGCCAAGGAAATTACTGTTCTATGCGATGCCCAAGTTTCCCTCATTATCTTTGCTGCTTCTGGAAAAATGCATGAATACATCAGCCCTTCAACCACGTTGATTGACATCCTAGAAAGATATCACAAAACATCTGGGAAGAGGCTCTGGGACGCTAAGCATGAGGACTTAAACAGCGAAATTGATAGACTCAAGAAAGAGAATGACAGCATGCAGATTGAGCTCAGGCACTTGAAGGGAGAGGATGTGAACACGCTCAATTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAATGTGGCGTCGCCGGTATACGCGAGAGACAGATGGAGATTCACAGTGCACACAGAAGAAATGGCAAGATCTTGGAGGAAGAGAACAGGGAGCTTAATTTTATACTGCAACAACGTTTGGCAATGGAAGGAGCAAGAGAAATGGAGAATGGATTTGATGAGAGCGTGAGGGAGTTCCATTCCCAGATGCCATTCGCCTTCCGTGTTCAGCCTATGCAGCCAAATCTTCATGAGAGGATGTGA 627 0.4561 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLIDILERYHKTSGKRLWDAKHEDLNSEIDRLKKENDSMQIELRHLKGEDVNTLNYKELMALEDALECGVAGIRERQMEIHSAHRRNGKILEEENRELNFILQQRLAMEGAREMENGFDESVREFHSQMPFAFRVQPMQPNLHERM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00331 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Accr4g00331 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Accr4g00331 208 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr4g00331 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Accr4g00331 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr4g00331 208 Coils Coil 77 111 - -
Accr4g00331 208 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Accr4g00331 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr4g00331 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00331 Accr-Chr4 3197627 3200328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00331 1 143 MADS-box Gene Family AT5G20240 66.434 4.56e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr4g00331 K-box 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00331 K09264 - gmx:100817554 359.377