Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr4g00323 | ATGGAAACTGAGGATGGAACAAACAATGGGGATAACACGGAATGTTCTGAAGCGGTTCAGTGCCTTAAGAGTGATACTGTAAATAGTGGGCTTGCAGATGGCAATGATGTTAAAAAAGGGGTTCAGCCCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTAATAGCAGACGGGAACGATGTTGCTCAAGGGGACTCTGGTGTAGGTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAATCAAAGCTCACGAAGATTGCACAACACACTCAGAAGCTGCAAGTCACATGGATGTAAAGAAATCATGTAATGTAGCTGTAGGAAATACTTGGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCATTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTAATGCGCTATCCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACCTGTAAAATTGACAAAGTTGGGCAAGATTACTCTCCACACTTTGAGCCGATGTCTCATAGGTTACAGAAGGAAGTTAATGGGCATGCAAATGTCTTGTGCAATGGATCTTATAACGAGTCAGATGGTCCTAACGCAAATGAGATGTGTCGGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTGTGTAAGGTGCTACTGGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAATTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCTCCCACACTTTTTTTGTCAGACGTTGAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCAAGAACTTTCTACTGTGAGCAGGCTGGAATTTCAGTGCATAGTACATTCAAAGATGGAAAACAGGAGTTCTGTAATCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAAATGGTGGCATGTATAAAATCTGCACTTGCAGGCATTGTGGAAACAAAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATATCTCCTGTATTAAGCCTCCCGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGCCAAATGCTCTGCTAGTGGAATCGTGTCTCCACATGAAAATTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCCTGAAAATGAGGAGACAATCAATGAATTCGAAGAGAATTCATATTGCTCCTATGATGGGGCTCAAGCATCTAGAAGGGAGGAAATTGACATGACCTGCAAAGTTTGTAGAAATGAAGCAGACGGTGAAGGAGTTAAAATCTGTGATCACCCCGCCTGCTCGAATAAGTATCATGTAAGGTGTTTGTCAAGTAAACAATTAACATCATATGGTCCCCGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATGGTCAGATTGTTCTCTGTGATGGCTGTGATCATGGATACCACATATATTGCATGAAACCTCGCCGAACTTCTATTCCCAAGGGAAAATGGTTCTGCAGGAAATGTGATACAGGGTTACAAGTAATACGACAGGCGAAAAAGTTATATGAGAGTAGAAGGCAGAGAAAAACAAGTGAAGATGGTTCAAAACGAAGTGATAGATTTGAAAAAAATTGGAATGGTAAACATGGACGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCAATCCGGACGTAG | 1857 | 0.4125 | METEDGTNNGDNTECSEAVQCLKSDTVNSGLADGNDVKKGVQPFNCEAVNNGVVIADGNDVAQGDSGVGESFRTYKRRKHVKLNSEIKAHEDCTTHSEAASHMDVKKSCNVAVGNTWDKHSHAHWGNVVLMHLYQSLGDDKGGIEGCMREALMRYPKISCATTLKETCKIDKVGQDYSPHFEPMSHRLQKEVNGHANVLCNGSYNESDGPNANEMCRRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFLSDVEQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGISVHSTFKDGKQEFCNQESDSHMKPEQTENGGMYKICTCRHCGNKADGKDCLVCDSCEEMFHISCIKPPVKEIPHKSWYCAKCSASGIVSPHENCVVCERLNDSKTLNFDESFPENEETINEFEENSYCSYDGAQASRREEIDMTCKVCRNEADGEGVKICDHPACSNKYHVRCLSSKQLTSYGPRWYCPSCLCQVCLTDKDDGQIVLCDGCDHGYHIYCMKPRRTSIPKGKWFCRKCDTGLQVIRQAKKLYESRRQRKTSEDGSKRSDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNLEEDLAAIRT | 618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr4g00323 | 618 | SUPERFAMILY | FYVE/PHD zinc finger | 451 | 501 | IPR011011 | - | |
| Accr4g00323 | 618 | SUPERFAMILY | FYVE/PHD zinc finger | 501 | 554 | IPR011011 | - | |
| Accr4g00323 | 618 | MobiDBLite | consensus disorder prediction | 561 | 590 | - | - | |
| Accr4g00323 | 618 | Gene3D | - | 239 | 394 | - | - | |
| Accr4g00323 | 618 | SUPERFAMILY | FYVE/PHD zinc finger | 343 | 392 | IPR011011 | - | |
| Accr4g00323 | 618 | SMART | PHD_3 | 504 | 547 | IPR001965 | - | |
| Accr4g00323 | 618 | SMART | PHD_3 | 453 | 501 | IPR001965 | - | |
| Accr4g00323 | 618 | SMART | PHD_3 | 346 | 392 | IPR001965 | - | |
| Accr4g00323 | 618 | Pfam | PHD-finger | 502 | 547 | IPR019787 | - | |
| Accr4g00323 | 618 | Pfam | PHD-finger | 347 | 393 | IPR019787 | - | |
| Accr4g00323 | 618 | ProSiteProfiles | Zinc finger PHD-type profile. | 499 | 549 | IPR019787 | - | |
| Accr4g00323 | 618 | PANTHER | OS02G0192300 PROTEIN | 215 | 405 | - | - | |
| Accr4g00323 | 618 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 436 | 496 | IPR013083 | - | |
| Accr4g00323 | 618 | ProSitePatterns | Zinc finger PHD-type signature. | 497 | 546 | IPR019786 | - | |
| Accr4g00323 | 618 | FunFam | PHD finger protein EHD3 isoform A | 234 | 395 | - | - | |
| Accr4g00323 | 618 | ProSiteProfiles | Zinc finger PHD-type profile. | 344 | 394 | IPR019787 | - | |
| Accr4g00323 | 618 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 497 | 559 | IPR013083 | - | |
| Accr4g00323 | 618 | ProSiteProfiles | Zinc finger PHD-type profile. | 451 | 503 | IPR019787 | - | |
| Accr4g00323 | 618 | SMART | ring_2 | 502 | 546 | IPR001841 | - | |
| Accr4g00323 | 618 | SMART | ring_2 | 454 | 500 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr4g00323 | 501 | 567 | C2H2 Transcription Factor Family | AT3G01460 | 41.791 | 1.29e-12 | 69.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Accr4g00323 | PHD | 3.1e-13 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr4g00323 | - | - | gmx:100795906 | 770.77 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Accr4g00323 | 4 | 3139039 | 3144933 | Accr4g00323 | 4 | 3139039 | 3144933 | ECH |