Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00260 ATGAATATTCGGCAAGAGAAGTCTGTCAGGTTTCAGGATTGTAATTGGAATGATGAGAACCTATATTCTGTCTCAAGTAACACAACCCACCCAGGGAGAATCACATCTTCGCTAAAGTCAGTTTCTATGAAATTTCAAAGAGGCTTCCAATCTGGTTCTGAAAGAATAAAGAGATTTAGGAATTCATTCAAATCTTTTCCTTATAATAGCGTGCTGGCTAGAAGTTTTAGTTCTGGAAATAAAATACTTGATCCACAGGGCTCATTCCTTCAAAAATGGAACAAGATATTTGTTTTATCATGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTTTATGTCCCTGTCGTTGATAGTGAAAAGAAATGCCTTTCATTGGACCACAAGATGGAGATAACAGCCACTGTTCTAAGATCTTTCTGTGACATTTTTTATATAATCCACATAATGTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTTTTTGGAAGGGGTGTTTTGGTTGAAGATGCTTGGGCCATAGCCAGGAGGTACCTGTCATCATACTTTTTGATTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTTTGATTGTGATCCCAAATTTAGGAGGAGGCTTTAAATCGCTGAACACAAAGAACTTTCTAAAATTTGTTGTTTTCTTCCAATATGTACCACGGCTTTTACGTGTTGTTCCTTTATGTAAAGAAATCACAAGCACCTCTGGCATTATCACTGCAACTGCTGGGGCTGGAGCAGCAATCAATCTTTTTCTTTACATGCTTGCTAGTCATGTTTTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACTTGCTGGCAACGAGCCTGCATTAGAAATGTTAAATGTAACAAGTCGGCTCTGTATTGTAGTTCTCCAGCATCAACTGACTTTGTGAACTACTTGAACGACTCTTGCCCAATACAAGAGGCAAATACTACACTTTTTGATTTTGGAATATTTCTAGATGCGCTTCAGGCTGGTATCGTGGAGCCAGGAGATTTCCCTCAAAAGTTTTTTTACTGTTTTTGGTGGGGCCTTAGAAATCTGAGTTCTCTTGGTCAGAACCTGAAAACAAGTACATATGTTTGGGAGATCATCTTTGCTGTTTTAATCTCCATCTCTGGTTTGGTTTTATTTTCATTTCTCATCGGAAATATGCAGACATATCTACAGTCAACAACGACAAGATTGGAAGAGATGAGAGTGAAAAAAAGAGATGCAGAACAATGGATGTCTCATCGGTTGCTCCCGGATAGTCTGAGAGAGCGAATCAGACGATATGAACAATACAAATGGCAAGAAACCAGAGGTGTTGATGAAGAAAACTTGATCCGCAATCTTCCAAAGGATTTACGTAGGGACATTAAGCGTCATCTTTGCTTGGCTCTGCTGATGAGAGTGCCAGTGTTTGAGAAAATGGACGAACAACTGTTGGATGCCATGTGTGACCGCCTGAATCCAGTGCTTCACACAGAAGAAAGCTGCATTGTCCGGGAAGGAGATCCCGTCGACGAGATGCTCTTCATAATGAGAGGGAAGCTACTAACAGTGACAACCAATGGTGGAAGAACTGGCTTCTTTAACTCAGAGTTTCTCAAGAGTGGTGACTTCTGTGGTGAGGAGCTTCTGACGTGGGCATTAGATCCTCATTCCACATCCAACCTTCCAATCTCAACCAGGACAGTACAAACCATTGTGGAAGTTGAAGCTTTTGCTCTCAAAGCTGATGACTTGAAGTTTGTGGCATCTCAGTTCAGGCGTCTTCATAGCAAGCAGCTTCGTCACACTTTTAGGTTCTACTCACAGCAATGGCGGACATGGGCTGCGTGCTTCATACAAGCAGGGTGGCGGAGATATAGTAAGAAGAAGCTGGAAGAGTCTCTGAGGGAAGAAGAGAATAGGCTGCAAGATGCACTGGCTAAGGCTGGTGGTACCTCGGCCAGCCTTGGGGCTACAATTTACGCTTCCAGATTTGCTGCTAATACTCTCCGAGCTTTACGGCGTAATCGGTCCAGGAAAACACGGTTACCTGAGAGATTTCCTCCCATGTTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCTGAATGA 2139 0.4222 MNIRQEKSVRFQDCNWNDENLYSVSSNTTHPGRITSSLKSVSMKFQRGFQSGSERIKRFRNSFKSFPYNSVLARSFSSGNKILDPQGSFLQKWNKIFVLSCLIAVSLDPLFFYVPVVDSEKKCLSLDHKMEITATVLRSFCDIFYIIHIMFQFRTGFIAPSSRVFGRGVLVEDAWAIARRYLSSYFLIDILAVLPLPQVVILIVIPNLGGGFKSLNTKNFLKFVVFFQYVPRLLRVVPLCKEITSTSGIITATAGAGAAINLFLYMLASHVFGAFWYLFSIERETTCWQRACIRNVKCNKSALYCSSPASTDFVNYLNDSCPIQEANTTLFDFGIFLDALQAGIVEPGDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVWEIIFAVLISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKKRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLALLMRVPVFEKMDEQLLDAMCDRLNPVLHTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKSGDFCGEELLTWALDPHSTSNLPISTRTVQTIVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAGWRRYSKKKLEESLREEENRLQDALAKAGGTSASLGATIYASRFAANTLRALRRNRSRKTRLPERFPPMLLQKPAEPDFTAE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00260 712 MobiDBLite consensus disorder prediction 693 712 - -
Accr4g00260 712 SUPERFAMILY Voltage-gated potassium channels 84 407 - -
Accr4g00260 712 Gene3D - 94 409 - -
Accr4g00260 712 Gene3D Jelly Rolls 483 603 IPR014710 -
Accr4g00260 712 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Accr4g00260 712 Coils Coil 637 657 - -
Accr4g00260 712 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 67 709 - -
Accr4g00260 712 Gene3D Helix hairpin bin 411 476 - -
Accr4g00260 712 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Accr4g00260 712 SMART cnmp_10 485 616 IPR000595 -
Accr4g00260 712 CDD CAP_ED 485 616 IPR000595 -
Accr4g00260 712 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Accr4g00260 712 Pfam Ion transport protein 93 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr4g00260 712 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00260 Accr-Chr4 2587210 2590686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00260 1 712 Ion Channels AT5G53130 75.939 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00260 K05391 - gmx:100815774 1118.61