Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00257 ATGGATATTCGCTTCCTGCTCTTGTTCTACATTCTTCCTCCAACAAGCATAGAAACATGCCCAGACGCCGTTTGCCAGAACGGCAACAAAATAATCCGATTCCCGTTTCGAATCCAACAGAGTCAGCTGCAGCCAAAGTCATGTGGTTATCCAGGTTTTGATGTATCTTGCAGCAATCACGGCCAAATACGGCTGAAAGTCCCTTACTCTGAAGGAGAATTCAGTATCCAAGGAATAGACTATACCTCACAACAACTGTGGATCAATGATCCCAAAAACTGCCTCCCAATACGCATTCTCTCTCTCAACCTCAATGGATCCCCGTTTAGTGGGGTTTATTATCGAGATTTCTCATTCTTCAACTGTTCCTCGCAATATCTCAAGTATCGGTATATCCCGATACCTTGTCTTAGCGATTCCAACCACACTGTTTTTGCCACACCTTCCAGATCGGTTTTCAGGCACTTGTCGTCGGTTTGCAGTTTCATTAGAACGGTTAGGGTTCCGGTTCAGCAGCCGTATTACGAGCATGTGTTAACGTCAGACCTGAGCGACGATCTCCGGCTGTCGTGGAATTCACCGCCGTGTGGGATGTGCGAGTCCCGCGGCGGACGGTGTGGCTTCAGGACCAATTCCACGGGTGACATTGGTTGTGCCTACTTTCCTTCCCAAGGGATTTCAAGGGCGGTACGTTATGCCATCAGCACATGCGCCGGAGTGCTGGCGACGTTGGGCCTCATTGGGCTGATGTACTACATTGGTGGAAAATGTGGGAGAGCCCAGACAGTTGTTCGGCCAGAACCAGAGCCCGCAATGTTATCGGGCCTTGATGGGCTTACAATAGAGTCATACCCAAAGCAAGTGGTGGGAGAGGCGGATGAGGGGACGTGCCCAATATGCCTGAGCGAGTACAGGCCCAAAGAGACGCTCAAGACCATACCAGCATGCCTCCACTCTTTCCATTCTCACTGCATCGATGCATGGCTTCACCTGAATGCTTCCTGCCCTCTTTGCAGGACTTCTCCCCCCAACTCCCTCACTTGA 1044 0.5057 MDIRFLLLFYILPPTSIETCPDAVCQNGNKIIRFPFRIQQSQLQPKSCGYPGFDVSCSNHGQIRLKVPYSEGEFSIQGIDYTSQQLWINDPKNCLPIRILSLNLNGSPFSGVYYRDFSFFNCSSQYLKYRYIPIPCLSDSNHTVFATPSRSVFRHLSSVCSFIRTVRVPVQQPYYEHVLTSDLSDDLRLSWNSPPCGMCESRGGRCGFRTNSTGDIGCAYFPSQGISRAVRYAISTCAGVLATLGLIGLMYYIGGKCGRAQTVVRPEPEPAMLSGLDGLTIESYPKQVVGEADEGTCPICLSEYRPKETLKTIPACLHSFHSHCIDAWLHLNASCPLCRTSPPNSLT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00257 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 344 IPR013083 -
Accr4g00257 347 Pfam Wall-associated receptor kinase galacturonan-binding 20 90 IPR025287 GO:0030247
Accr4g00257 347 SUPERFAMILY RING/U-box 292 342 - -
Accr4g00257 347 SMART ring_2 297 338 IPR001841 -
Accr4g00257 347 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 342 IPR046948 -
Accr4g00257 347 ProSiteProfiles Zinc finger RING-type profile. 297 339 IPR001841 -
Accr4g00257 347 Pfam Wall-associated receptor kinase C-terminal 156 220 IPR032872 -
Accr4g00257 347 Pfam Ring finger domain 296 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00257 Accr-Chr4 2573094 2575635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00257 18 342 C3H Transcription Factor Family AT2G46495 36.499 1.94e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00257 - - pcin:129294476 565.074