Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00243 ATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGACGGTATTGATGAAGACGAGATCCACCATCATGGCATACATCCCCACCCCCATCATCACTCTGAGTTTTCATCCTCGAAGCCTCGCAATGGTGCCATCAATATGGGCCCCACGGCCATTGCTCCGGCAACCAGTGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCCATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTCTGGCCCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGCAAATTCTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGGCAGTGTGCAGTTTCAGACCATACAATTGTCCTTATGCTGGATCAGAATGTTCAGTTGTTGGAGACATCCCTTTCCTCATTGCACATCTGAGGGATGATCATAAAGTGGACATGCACACAGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGGATGGCACCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCGAATGGCCGGAAACTGATTTGGGAGGGTACTCCAAGAAGTGTCCGGGATAGCCATCGTAAGGTCAGGGATAGTCACGACGGCCTTATTATCCAACGAAATATGGCCCTTTTTTTCTCTGGAGGGGACAGGAAGGAGCTTAAGCTTAGAGTTACCGGAAGAATATGGAAAGAACAACAGAATCCAGATTCTGGGGTGTGCATACCAAATCTCTGTAGCTGA 981 0.4709 MDLDNIECVSSSDGIDEDEIHHHGIHPHPHHHSEFSSSKPRNGAINMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHEAVCSFRPYNCPYAGSECSVVGDIPFLIAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGVCIPNLCS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00243 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 116 IPR013083 -
Accr4g00243 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 170 IPR013083 -
Accr4g00243 326 ProSiteProfiles Zinc finger RING-type profile. 64 100 IPR001841 -
Accr4g00243 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 43 311 - -
Accr4g00243 326 MobiDBLite consensus disorder prediction 18 37 - -
Accr4g00243 326 Pfam Seven in absentia protein family 106 305 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr4g00243 326 SUPERFAMILY RING/U-box 54 106 - -
Accr4g00243 326 MobiDBLite consensus disorder prediction 18 49 - -
Accr4g00243 326 FunFam E3 ubiquitin-protein ligase SINAT3 116 172 - -
Accr4g00243 326 CDD RING-HC_SIAHs 62 100 - -
Accr4g00243 326 FunFam E3 ubiquitin-protein ligase SINAT5-like 173 305 - -
Accr4g00243 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 305 IPR008974 GO:0005515
Accr4g00243 326 SUPERFAMILY TRAF domain-like 117 309 - -
Accr4g00243 326 FunFam E3 ubiquitin-protein ligase SINAT3 11 115 - -
Accr4g00243 326 CDD Sina 178 306 - -
Accr4g00243 326 ProSiteProfiles Zinc finger SIAH-type profile. 117 177 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00243 Accr-Chr4 2361954 2368615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00243 36 312 C3H Transcription Factor Family AT2G41980 76.259 3.36e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00243 K04506 - cave:132180687 626.706