Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00242 ATGATTTTGATTTCTGGGTATTTCATATATCCATCACTTGTGGGAGGTTTCGGTGACTGGATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGACGGTATTGATGAAGACGAGATCCACCATCATGGCATACATCCCCACCCCCATCATCACTCTGAGTTTTCATCCTCGAAGCCTCGCAATGGTGCCATCAATATGGGCCCCACGGCCATTGCTCCGGCAACCAGTGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCCATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTCTGGCCCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGCAAATTCTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGGCAGTGTGCAGTTTCAGACCATACAATTGTCCTTATGCTGGATCAGAATGTTCAGTTGTTGGAGACATCCCTTTCCTCATTGCACATCTGAGGGATGATCATAAAGTGGACATGCACACAGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGGATGGCACCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCGAATGGCCGGAAACTGATTTGGGAGGGTACTCCAAGAAGTGTCCGGGATAGCCATCGTAAGGTCAGGGATAGTCACGACGGCCTTATTATCCAACGAAATATGGCCCTTTTTTTCTCTGGAGGGGACAGGAAGGAGCTTAAGCTTAGAGTTACCGGAAGAATATGGAAAGAACAACAGAATCCAGATTCTGGGGTGTGCATACCAAATCTCTGTAGCTGA 1041 0.4669 MILISGYFIYPSLVGGFGDWMDLDNIECVSSSDGIDEDEIHHHGIHPHPHHHSEFSSSKPRNGAINMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHEAVCSFRPYNCPYAGSECSVVGDIPFLIAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGVCIPNLCS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00242 346 ProSiteProfiles Zinc finger SIAH-type profile. 137 197 IPR013010 GO:0008270
Accr4g00242 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 193 325 - -
Accr4g00242 346 FunFam E3 ubiquitin-protein ligase SINAT3 31 135 - -
Accr4g00242 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 325 IPR008974 GO:0005515
Accr4g00242 346 MobiDBLite consensus disorder prediction 39 60 - -
Accr4g00242 346 SUPERFAMILY TRAF domain-like 137 329 - -
Accr4g00242 346 Pfam Seven in absentia protein family 126 325 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr4g00242 346 CDD RING-HC_SIAHs 82 120 - -
Accr4g00242 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 190 IPR013083 -
Accr4g00242 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 63 331 - -
Accr4g00242 346 MobiDBLite consensus disorder prediction 39 57 - -
Accr4g00242 346 SUPERFAMILY RING/U-box 78 124 - -
Accr4g00242 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 136 IPR013083 -
Accr4g00242 346 CDD Sina 198 326 - -
Accr4g00242 346 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
Accr4g00242 346 FunFam E3 ubiquitin-protein ligase SINAT3 136 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00242 Accr-Chr4 2361894 2368615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00242 56 332 C3H Transcription Factor Family AT2G41980 76.259 1.33e-161 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00242 K04506 - cave:132180687 626.706