Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00228 ATGGCACTGTCAAGCCCACACATGCAAAGATTACTCTTAACCAAACTCCATGGCCGTTCCACCTCCATTAATAGCATCCGCAGAAACACCGTCGCCAATACGTGCAGAGGCCGCTGCTGCTCCGCCATAGCCATCGATACTCCGTCGTCTTTGTCTGACGTGGCAGGCATCCGATGGGGATCCATTGCTTTGCAGGGTCTTCGCGAAGAAATGGAAGATGGCATTATTGTTCGTCCTGATGGCCTCCATGGCTTCTCTTTTGCAGCTGTGTTTGATGGCCATGGAGGATTCTCTTCCGTCGAGTTCCTCAGGGATGAACTGTACAAGGAGTGTCTTGCAGCTTTACAAGGTGGGTTACTATTTGACAGAAAAGATTTCCAAGCCATTAATGCAGCATTACAGGAGGCATTTGTTAATGCCGACAAAAGTTTGTTAAAACGGCTTGAAATGAATGGAGATGAAGATGAATCTGGCGCTACAGCAACTGCAATATTCGTCGGAGATGATATGCTTCTCATTTCACATCTAGGTGACTCATCTGTGGTTCTAAGCAGGTCTGGTAGAGCAGAAGAGCTGACTAATCCCCACCGACCCTATGGGAACAGTAAAGCCAGTCTTCAAGAAATTAAAAGAATTAGAGAAGCAGGTGGATGGATTGTCAATGGTAGAATTTGTGGAGACATTGCCGTATCCCGTGCATTTGGGGATATAAGATTCAAAACAAAGAAGAATGAAATGCTGAGAAAAGGGGTTGAGGAAGGAAGATGGTCTGAAAAATTTGCTTCTCGTGTACAGCTCAACAGAGATTTGGTCATTGCATGCCCTGATATTTATCAAGTACAACTTGGCTCGGATGCAGAATTTATAGTATTGGCATCTGATGGTTTATGGGACTACATGAGCAGCTCAGAAGCAGTTTCTTTTGTGAGGAATCAACTTCGAGAGCATGGTAATATTCAGCTAGCTTGTGAAGCTCTTGCACAAGCAGCTCTCGATCGACGCACACAGGATAACATTAGCATCATAATTGCTGATTTAAGGCGGACAGACTGGCAGAACTTGCCACTTCAGCGGCAAAACGTTGTTTATGAGGTGGTTCAAGCTTTAGCCACCGTTGGGATAGTGTCACTTGGAATTTGGTTTTCATCCCAGGTCTTATGA 1161 0.4522 MALSSPHMQRLLLTKLHGRSTSINSIRRNTVANTCRGRCCSAIAIDTPSSLSDVAGIRWGSIALQGLREEMEDGIIVRPDGLHGFSFAAVFDGHGGFSSVEFLRDELYKECLAALQGGLLFDRKDFQAINAALQEAFVNADKSLLKRLEMNGDEDESGATATAIFVGDDMLLISHLGDSSVVLSRSGRAEELTNPHRPYGNSKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLRKGVEEGRWSEKFASRVQLNRDLVIACPDIYQVQLGSDAEFIVLASDGLWDYMSSSEAVSFVRNQLREHGNIQLACEALAQAALDRRTQDNISIIIADLRRTDWQNLPLQRQNVVYEVVQALATVGIVSLGIWFSSQVL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00228 386 CDD PP2Cc 57 346 IPR001932 -
Accr4g00228 386 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Accr4g00228 386 PANTHER PROTEIN PHOSPHATASE 2C 52 344 IPR015655 GO:0004722|GO:0006470
Accr4g00228 386 ProSiteProfiles PPM-type phosphatase domain profile. 58 346 IPR001932 -
Accr4g00228 386 SMART PP2C_4 48 344 IPR001932 -
Accr4g00228 386 Gene3D - 57 353 IPR036457 -
Accr4g00228 386 Pfam Protein phosphatase 2C 60 339 IPR001932 -
Accr4g00228 386 SUPERFAMILY PP2C-like 53 347 IPR036457 -
Accr4g00228 386 FunFam Protein phosphatase 2C 57 57 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00228 Accr-Chr4 2279197 2282308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00228 1 323 PP2C-type Phosphatase Gene Family AT4G27800 61.538 1.94e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00228 K04457 - vra:106776113 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00228 4 2279197 2282308 Accr4g00228 4 2279197 2282308 ECH