Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00223 ATGTCGCTCCGACGAAGGACTCACGCTTTCAAACCGCCATCCAAGTCCGCTTCAATCGGTAAATCGCTCGATTACGATGACGTGTGCTGCGATGAATGTGGATCCGGTCACTCGCCGGCCAAGTTGATACTTTGCGATAAATGTGATCGAGGATACCACCTGTTCTGCCTCAGACCCATACTTGTTTCTGTGCCTAAGGGCTCTTGGTTCTGTCCCTCTTGCTCTAAAATCAAGATGCCGAAGTCATTTCCTCTAGTTCAGACAAAAATTATTGATTTCTTTCGCATTCAACGATCGCCGCAAGCTATTCAAGCATCCAGTCAAGATACCCGAAAGAAACGAAAGCGAGCTACGAGCCTAGTGGTGTCGAAAAAGAAAAGAAAGCTGCTGCCATTCTGCCCAAGTGAGGATCCTTCAAGGAGATTAGAACAGATGGCATCTCTAGCAACGGCATTGACGGCAACTAACACAGAATTCAGCGATGAGCTTACTTACATGCCTGGAATGGCACCGAGATCAGCTAATCGTGCGTCTCTTGAAAAGGGTGGAATGCAGGTTTTGTCCAAAGAAGATACAGACACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTTTGACCCTCAAGAAGGGTTCACTGTTGAGGCAGATAAATGGATAAGAGACTTGACAATAATCACAGAATATTGTGGAGATGTTGACTTCTTGAGGAAACGTGAAAATGACGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTGATGCTTCAAAAAAGTTAGTAATCTGTCCGGACAGACGAAGCAACATCGCACGGTTTATTAACGGCATCAACAATCACACACCGGAAGGAAAGAAGAAGCAGAACTTAAAATGCGTGAGGTTCGACGTCAATGGGGAGTGTCGGGTTCTGCTGATTGCAAACAGAGACATATCAAAGGGGGAGAGATTGTACTATGACTACAACGGAAGCGAGCATGAGTATCCAACGGAACACTTCGTGTAA 1029 0.4587 MSLRRRTHAFKPPSKSASIGKSLDYDDVCCDECGSGHSPAKLILCDKCDRGYHLFCLRPILVSVPKGSWFCPSCSKIKMPKSFPLVQTKIIDFFRIQRSPQAIQASSQDTRKKRKRATSLVVSKKKRKLLPFCPSEDPSRRLEQMASLATALTATNTEFSDELTYMPGMAPRSANRASLEKGGMQVLSKEDTDTLNLCKSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIITEYCGDVDFLRKRENDDGDSMMTLLSASDASKKLVICPDRRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00223 342 FunFam Histone-lysine N-methyltransferase ATXR5 114 342 - -
Accr4g00223 342 Gene3D SET domain 114 342 IPR046341 -
Accr4g00223 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 90 IPR013083 -
Accr4g00223 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Accr4g00223 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Accr4g00223 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Accr4g00223 342 CDD SET_ATXR5_6-like 205 342 - -
Accr4g00223 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Accr4g00223 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 103 340 - -
Accr4g00223 342 SUPERFAMILY FYVE/PHD zinc finger 19 81 IPR011011 -
Accr4g00223 342 Pfam SET domain 131 330 IPR001214 GO:0005515
Accr4g00223 342 Pfam PHD-finger 30 75 IPR019787 -
Accr4g00223 342 SMART PHD_3 29 75 IPR001965 -
Accr4g00223 342 CDD PHD_RSF1 30 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00223 Accr-Chr4 2227136 2229140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00223 27 91 C2H2 Transcription Factor Family AT3G01460 32.836 9.46e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr4g00223 SET 8.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00223 K24406 - cave:132167302 550.436