Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00198 ATGGGTGAATTTGGCGTTTGGGACAAGGAAGCCGCAAAAAATAGCAGCAATGCTGCTGTTGGATTGGGTATGAAGGTGCAGAAGCAGAAGCTTGAAGCATTCCCTAGTAAGAACATGATGATGATGGTTCCCCCTCCTCATAATCATCACGATCCTCCACTATATGGTCCCTCCTTTGCTGCTCCTGGTAATGGTGATGTCTTTACAACTTGTAAGTCCCTCACTAATTATACAAACCATTTTGTTCATGCTGCTTCTGCTTCTGGTGCTGCCCATGTTAGACCCTTGCAGTTGCAGCCTCTTCACGTTTCTGCCTCTACCGCCTTCCAATCCTCAGCAGGAGGGTTGATGGCAGCTTCACTGGGATTTCCTTTCACAAAAGCACAGTGGAAGGAGCTTGAAAGACAAGCTATGATATACAAGTACATGATGGCTTCTATTCCTGTTCCTCCTTATCTGCTTATCCCTGTGCCTTCGTCTCGCTCTCCCTCGGATGCCGGTTTGAATCTAATGTTTTCAAGCAGTAGTGACGCAGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGTTCAAGAGACGTAGCCCCTAACCACAAGTATTGCGAGCGTCATATGCACAGAGGTCGTCCCCGTTCAAGAAAGCATGTGGAAATTCAAGCCACCACCAACAATAATCAGCAAATCAATAGAACTAGCCAAGATTATCCTTCTTTATCTACTCCTACTATGACTATCTCTAACTCCACAATCCGTAAGAACGGATCTTCATCTCCGTTTCTTGCGTCTGCCACCACCTGTCAGCCATACTTTAAATCTTCCCTTTCTATTGATAAGCTCGGCATCAAAGCTGCAAATTTTAATTCCCCTGCTTCCGTTCCCAGCGGCGGGGACTGGCTTCTGAAAGGAGACCCTAATCCCATGGATCCTCAATGGCATCATCTGATACAGAACAAACTCGGATTGAACACGGGAAGTTCGGGTAACAAGGACGCCTCAATTTCAATGACTTATTCGAAAGGCCTTCTTTATACGCATTCGTATGATGTTTTCAGTTCTGAACGAGACCAACACAACAAGCGGTCTCCTTTATACCTCAATTCTCTTGCAGTTCCTATAGAAAATCCTCGGTCTGTAAAACCAAGAGCTTCCATTGATGCTTGGTCGAGTGCAGAAATCAATGCCAACAAATGGAGCTCTGTTGCTGCATCGAATAACGAGTTGTCACTTCCTTCTCTTGATTTGTCAGTGGGTCGTGCTGTGGAGGAAGGCATAGGTTCTTTTCAATTGGGCTTGGGCCAAATGGATCCCCAAGGGAATTGGGCCTCATGTTCAACTCCTGGGGGCCCACTAGCGGAAATGTTGAGGCCCAGCAAGGTGGTGACCAGCACCAGTGAGAGCGCTAGGGCAACAATGGGATCATCTCCATCTGGGGTGCTGCAGAAGACGCTTGCTTCATTTTCTGATGGTAGTTGCAGTAGCAGCCCGAGGCCGAGGGGTGGGACTTCCAGGGTCACTTCTGATATGGCCTTGCTCTGCTTTAATTATAACAAACTACCTTCTTAG 1572 0.4714 MGEFGVWDKEAAKNSSNAAVGLGMKVQKQKLEAFPSKNMMMMVPPPHNHHDPPLYGPSFAAPGNGDVFTTCKSLTNYTNHFVHAASASGAAHVRPLQLQPLHVSASTAFQSSAGGLMAASLGFPFTKAQWKELERQAMIYKYMMASIPVPPYLLIPVPSSRSPSDAGLNLMFSSSSDAEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKHVEIQATTNNNQQINRTSQDYPSLSTPTMTISNSTIRKNGSSSPFLASATTCQPYFKSSLSIDKLGIKAANFNSPASVPSGGDWLLKGDPNPMDPQWHHLIQNKLGLNTGSSGNKDASISMTYSKGLLYTHSYDVFSSERDQHNKRSPLYLNSLAVPIENPRSVKPRASIDAWSSAEINANKWSSVAASNNELSLPSLDLSVGRAVEEGIGSFQLGLGQMDPQGNWASCSTPGGPLAEMLRPSKVVTSTSESARATMGSSPSGVLQKTLASFSDGSCSSSPRPRGGTSRVTSDMALLCFNYNKLPS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00198 523 ProSiteProfiles WRC domain profile. 177 221 IPR014977 -
Accr4g00198 523 ProSiteProfiles QLQ domain profile. 124 159 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr4g00198 523 SMART QLQ_2 123 159 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr4g00198 523 Pfam QLQ 124 157 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr4g00198 523 PANTHER GROWTH-REGULATING FACTOR 5 106 359 IPR031137 GO:0005634|GO:0006351|GO:0032502
Accr4g00198 523 Pfam WRC 178 220 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00198 Accr-Chr4 1981863 1984359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00198 387 493 GRF Transcription Factor Family AT5G53660 34.752 3.43e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Accr4g00198 WRC 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00198 - - pcin:129294126 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00198 4 1981863 1984359 Accr4g00198 4 1981863 1984359 ECH