Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00196 ATGGGGAAGGCAGGAGGAAGCTCTTGGTTGGCAACTGTCAGAAGGGCTTTCAGGTCTTCCACCAAAGAAAAGGGCAAGAAAAGCAGCAGGACTAGAGAAGAGCACGAACAAGAGGAGGAGGAAAACAAGAGGGGAAAACGAAGATGGATCTTCAGAAGCCCCTTTGGCCAAGAGACAACAAGCCTGCATTGCGAAGAAAGAACCATAACAAGTGTAGCTGACGTAACGACAAGAAGTTACGATGTAGAGCAACAAAGGCATGCGATTGCAATAGCCATGGCAACCACAGCGGCTGCTGAGGCGGCGTTAGCCACCGCTCAAGCAGCTGTGGAGGTTGTTCGCCTTTCTAAGCCTTCCTTCTTAGTCAGAGAGCATAACGCAGCCATTGTAGTCCAAACAGCTTTCCGAGGCTATCTGGCGAGGAGAGCTCTTGGGGCACTTAAAGGATTAGTGAAGCTGCAAGCATTAGTGAGAGGTCATAATGTACGAAAACGAGCTAAACTAACACTGGAGTGCATGCAAGCTCTCATTCGAGTTCAAACTCGAGTGTGCGAACAGCGAGCCAAGAGGCTCTCACAACATGAAAGAGCCACAGATTCTACAGACGAGCGTGGAACAGATCAGCAAGTGTGGATGCGCTGGGATGACCACCCACGAACGGTTGATAACATTCGAGCTCTTCTAAAGAGAACAGAGGAAGTTTCCTCAAGAAGTGAAATGTCCCTGGCTGATGCCTTCTCTCATCAGATATGGACAACTGGTAGAGAAGCATGCACCAGCGAGGAAGAGGTAGAAGAGAGAGACGGCTCCACGTGGAGGAGAAGATGCAGAGAGAACAGAGTCAGAGCTTCGTGTGGTCCAAGAGACGCCATCAAAATAGTTGAAATCGATACATACAGTCATTGCTCTAACCATGGTTTTGCTGATAAGGAGAGATCATATGGTGGGTATAAACCTCAGTTCATTAAACCACCAAGACTTTCATTTTCTTCGCCTAATAAAGCCCACTACGAGATCTCAACGGCAACGACACCCCCACCAATGAGGATGAAGCATGTTGAGATGATTTCAGCCGAAAAGTCCAATGCTTCGATGACAAATTATATGGCAGCCACTGCATCTGCGAAGGCTCGTTCTCGCCCTCAAAGCACCCTCGGACACAGGATTTCAACCCACGAGAAGGATAAAATGGGATCCATTACGAAACGCTTTTCATTCCCAGCTCCTAATTCTTGTGATGGTGTCGACACTTGA 1254 0.4825 MGKAGGSSWLATVRRAFRSSTKEKGKKSSRTREEHEQEEEENKRGKRRWIFRSPFGQETTSLHCEERTITSVADVTTRSYDVEQQRHAIAIAMATTAAAEAALATAQAAVEVVRLSKPSFLVREHNAAIVVQTAFRGYLARRALGALKGLVKLQALVRGHNVRKRAKLTLECMQALIRVQTRVCEQRAKRLSQHERATDSTDERGTDQQVWMRWDDHPRTVDNIRALLKRTEEVSSRSEMSLADAFSHQIWTTGREACTSEEEVEERDGSTWRRRCRENRVRASCGPRDAIKIVEIDTYSHCSNHGFADKERSYGGYKPQFIKPPRLSFSSPNKAHYEISTATTPPPMRMKHVEMISAEKSNASMTNYMAATASAKARSRPQSTLGHRISTHEKDKMGSITKRFSFPAPNSCDGVDT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00196 417 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Accr4g00196 417 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Accr4g00196 417 SMART iq_5 146 167 IPR000048 GO:0005515
Accr4g00196 417 SMART iq_5 123 145 IPR000048 GO:0005515
Accr4g00196 417 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
Accr4g00196 417 MobiDBLite consensus disorder prediction 1 45 - -
Accr4g00196 417 MobiDBLite consensus disorder prediction 17 45 - -
Accr4g00196 417 Pfam IQ calmodulin-binding motif 151 167 IPR000048 GO:0005515
Accr4g00196 417 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Accr4g00196 417 Pfam Protein of unknown function (DUF4005) 338 413 IPR025064 -
Accr4g00196 417 Coils Coil 28 48 - -
Accr4g00196 417 Gene3D - 122 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00196 Accr-Chr4 1977851 1979418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00196 1 417 IQD Protein Family AT1G01110 34.722 2.46e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00196 - - cave:132174964 348.977