Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00194 ATGTCACAGCAAAGCCCAGATAAGATGGCGAGTCCAAACAACGCTAAACAAGTTGGTGACACGACCTACACCAAGATCTTCGTTGGGGGACTGGCCTGGGAGACAAAAAGAGACACACTCAGACACTTTTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTCATACACGACAGAAACAGTGAAAGATCAAAAGGCTATGGCTTTGTGACGTTCAAGAGCCCAGATTCTGCAACAAGAGCCTGCCAGAATCCCTATCCTGTGATTGATGGGAGGAGCGCTAATTGTAATCTCGCAGCTTTTGGTTCACAAAGACTCAACCCATACCCAAAAGTTGCAGGAAAGGAGAAATTTAGTACAAGTTCTTGGCCTATGGTTTTAGTTCCAAGTCAAGGAATCCCCTCTTATTACAATCAACACATACCCCAGTATGCGTTTCCTTATCCACTATTCTGGTACCCTGGATATCCCACACAAGAAATTTACGCAATGAACTATTATAATGTCTTTGGGGGACATCAAATTCCGATTCGTTGGCCTTCAGTATATTACCAGCCGTATAATGGGGTTGGACAGTTGGTTGCGCCAGCATATTTGAAAAAGGCACAATTCCCGGAGCCTTCATCTCAGAAGTTGTTCACAGTCGGGGGCTCATCACAACTTATCTCAACTTCTCCCACAATACCCACCACAGGAGCAGGGGGCGCTGCAGGAATGGTCGGAGCCTTCCCTGAGCAGAAATCTTGA 747 0.4605 MSQQSPDKMASPNNAKQVGDTTYTKIFVGGLAWETKRDTLRHFFEQFGEILEAVVIHDRNSERSKGYGFVTFKSPDSATRACQNPYPVIDGRSANCNLAAFGSQRLNPYPKVAGKEKFSTSSWPMVLVPSQGIPSYYNQHIPQYAFPYPLFWYPGYPTQEIYAMNYYNVFGGHQIPIRWPSVYYQPYNGVGQLVAPAYLKKAQFPEPSSQKLFTVGGSSQLISTSPTIPTTGAGGAAGMVGAFPEQKS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00194 248 PANTHER BOULE-RELATED 10 214 - -
Accr4g00194 248 SMART rrm1_1 25 97 IPR000504 GO:0003723
Accr4g00194 248 SUPERFAMILY RNA-binding domain, RBD 14 100 IPR035979 GO:0003676
Accr4g00194 248 Gene3D - 1 109 IPR012677 -
Accr4g00194 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Accr4g00194 248 CDD RRM_RBM24_RBM38_like 24 99 - -
Accr4g00194 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00194 Accr-Chr4 1892053 1893426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00194 20 117 C2H2 Transcription Factor Family AT2G19380 38.776 1.13e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00194 - - pcin:129294759 330.872