Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr4g00193 | ATGTCACAGCAAAGCCCAGATAAGATGGCGAGTCCAAACAACGCTAAACAAGTTGGTGACACGACCTACACCAAGATCTTCGTTGGGGGACTGGCCTGGGAGACAAAAAGAGACACACTCAGACACTTTTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTCATACACGACAGAAACAGTGAAAGATCAAAAGGCTATGGCTTTGTGACGTTCAAGAGCCCAGATTCTGCAACAAGAGCCTGCCAGAATCCCTATCCTGTGATTGATGGGAGGAGCGCTAATTGTAATCTCGCAGCTTTTGGTTCACAAAGACTCAACCCATACCCAAAAGTTGCAGGAAAGGAGAAATTTAGTACAAGTTCTTGGCCTATGGTTTTAGTTCCAAGTCAAGGAATCCCCTCTTATTACAATCAACACATACCCCAGTATGCGTTTCCTTATCCACTATTCTGGTACCCTGGATATCCCACACAAGAAATTTACGCAATGAACTATTATAATGTCTTTGGGGGACATCAAATTCCGATTCGTTGGCCTTCAGTATATTACCAGCCGTATAATGGGGTTGGACAGTTGGTTGCGCCAGCATATTTGAAAAAGGCACAATTCCCGGAGCCTTCATCTCAGAAGTTGTTCACAGTCGGGGGCTCATCACAACTTATCTCAACTTCTCCCACAATACCCACCACAGGGGGCGCTGCAGGAATGGTCGGAGCCTTCCCTGAGCAGAAATCTTGA | 741 | 0.4588 | MSQQSPDKMASPNNAKQVGDTTYTKIFVGGLAWETKRDTLRHFFEQFGEILEAVVIHDRNSERSKGYGFVTFKSPDSATRACQNPYPVIDGRSANCNLAAFGSQRLNPYPKVAGKEKFSTSSWPMVLVPSQGIPSYYNQHIPQYAFPYPLFWYPGYPTQEIYAMNYYNVFGGHQIPIRWPSVYYQPYNGVGQLVAPAYLKKAQFPEPSSQKLFTVGGSSQLISTSPTIPTTGGAAGMVGAFPEQKS | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr4g00193 | 246 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
| Accr4g00193 | 246 | Gene3D | - | 1 | 109 | IPR012677 | - | |
| Accr4g00193 | 246 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 83 | IPR000504 | GO:0003723 | |
| Accr4g00193 | 246 | SUPERFAMILY | RNA-binding domain, RBD | 13 | 100 | IPR035979 | GO:0003676 | |
| Accr4g00193 | 246 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
| Accr4g00193 | 246 | PANTHER | BOULE-RELATED | 10 | 214 | - | - | |
| Accr4g00193 | 246 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 101 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr4g00193 | Accr-Chr4 | 1892053 | 1893426 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr4g00193 | 20 | 117 | C2H2 Transcription Factor Family | AT2G19380 | 38.776 | 1.05e-14 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr4g00193 | - | - | pcin:129294759 | 350.517 |