Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00192 ATGGCGGTAGCTGAGAATGCCGGAGCCACAATCGGGTCATCCAGTGAAAATTTAGACAACGGTGTAGTATCATCGGACTCAACTGTGACAAATGAACTGGAGAAATCGAAACCCAGAACTGGGGCCTTTGTAAATGGTTTAGAAACTGATGTTCAACACGTCAACGGCGATCAGAGTCTGAATGATGTGTTCGACCATCAGGATAGAGCTCCCTCGGTCCCTAATGGCAACTACAAGTCTCAAATCACTCAGATGCGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGCGCTTAATAATAGCGGTTACGGAATTAAGCAAATGTCTAACGGTGTAAGGAATGGTGACGATGGTGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTCACCAATCATCACGGATTCTTCGGTGACTCTGGGTTTAGCTACCCTAACAACTTTATACCCCACCTTAATTATGGCAATGCAAATGGACATACTAACAGAAGGAGGAAGAATGGATACAATCAAGGAAAGCGAAGAGCTAATAATAAAATGGATGTGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTGTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGCGTATGCGGGGATACTAATTCCATACTTCGTTTTGCCTTCATCGAGTTTACAGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGTACTATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACACAGGCAGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCTACGATTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATTGCATTTGTTGAGTTCACTATGGCTGAAAGTGCTATTGCTGCACTGAACTGCAGTGGTGTGGTTTTGGGTTCGCTGCCTATCAGGGTGAGTCCATCGAAGACACCTGTCCGGTCTCGTGTGCCACGTGGGTCAATGCAATGA 1194 0.4523 MAVAENAGATIGSSSENLDNGVVSSDSTVTNELEKSKPRTGAFVNGLETDVQHVNGDQSLNDVFDHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMALNNSGYGIKQMSNGVRNGDDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNHHGFFGDSGFSYPNNFIPHLNYGNANGHTNRRRKNGYNQGKRRANNKMDVEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDTNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVLRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRVPRGSMQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00192 397 CDD RRM2_CID8_like 305 386 IPR034825 -
Accr4g00192 397 CDD RRM1_CID8_like 210 289 IPR034823 -
Accr4g00192 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Accr4g00192 397 FunFam Polyadenylate-binding protein-interacting protein 11 175 289 - -
Accr4g00192 397 MobiDBLite consensus disorder prediction 1 41 - -
Accr4g00192 397 SMART rrm1_1 310 381 IPR000504 GO:0003723
Accr4g00192 397 SMART rrm1_1 213 283 IPR000504 GO:0003723
Accr4g00192 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Accr4g00192 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Accr4g00192 397 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Accr4g00192 397 SUPERFAMILY RNA-binding domain, RBD 298 391 IPR035979 GO:0003676
Accr4g00192 397 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 134 390 - -
Accr4g00192 397 MobiDBLite consensus disorder prediction 8 35 - -
Accr4g00192 397 MobiDBLite consensus disorder prediction 176 202 - -
Accr4g00192 397 Gene3D - 174 289 IPR012677 -
Accr4g00192 397 Gene3D - 295 390 IPR012677 -
Accr4g00192 397 FunFam Polyadenylate-binding protein-interacting protein 10 303 381 - -
Accr4g00192 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Accr4g00192 397 SUPERFAMILY RNA-binding domain, RBD 185 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00192 Accr-Chr4 1886105 1889833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00192 214 373 Eukaryotic Initiation Factors Gene Family AT1G34140 26.220 8.97e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00192 - - qsa:O6P43_014935 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00192 4 1886105 1889833 Accr4g00192 4 1886105 1889833 ECH