Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00172 ATGGGTGCGGCCGTCGAGTGTTGTCCGCCGCGCGCTGATGAGATGGCGGTTTTGCCGCTGAATTCGCTCCCTCTAGGCTTTAGGTTTCGTCCTACGGATGAGGAGCTGGTCGATTACTATTTGCGACAGAAGATCAACGGAAATGGGGGTGACGTATGGGTTATTCGAGAAATTGATGTTTGCAAATGGGAGCCTTGGGATTTGCCGGATTTATCGGTTGTACGGAACAGGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGCAAATATCCAAATGGGCATCGATTGAACCGAGCAACGGCTCATGGGTACTGGAAGGCAACGGGCAAAGATCGCAAAATTAAGTCTGGTTCAATCGTGATTGGAATGAAGAAGACTTTAGTCTTCTATACTGGTCGTGCACCCAGAGGGAAGAGGACCAATTGGGTTATGCATGAGTACCGTCCTACACTAAAGGAACTCGATGGTACCAATCCTGGACAGAGTGCATATGTCCTTTGTCGTTTATTTAAGAAGCAAGATGAGACTCTTGAAGGTCCAAAATGTGAGGGAAATGACCGGACTGAGTCAACTCCAACTACTGCTAATTACTCTCCAGAAGAAATACAATCAGATGTTGTTCCGATGGCAGCTTCTTCGTCCTTAGTTACTGAAGATGATAAGAACAGAGCAGTTCCATTCTCTACCTCAGAGAATTCTGAGGAAGCCACATCCAACATTATAACACCGGTTGATTGTAACAGCGAAGAATGTGATACTTGTGATCTACAAAATAAGATTGTTATTCCAACAACTACAGAGGAAGATGAGCTTTTGAACCTTGACATATTTTATGATCCAACAACTGAACCATTGGATGACAAACTCTTCTCCCCTGTACACCAGCATATGCCACCAGAATTTTGTTTTCCTTCAAGCAATGAAGCGGATAATTGTGGTATGCAACTTCAGTACGGTACAAATGAGATTGATATGACTGAGTTTCTAAACTCAGTTGTCAAGTGGGATGAGTTGTCGTATGATTCCAGCTGTCAAATGCCCACTTCCACCTTGGTTGATGCTAAGGATAATGGATCAGGCAGTGATTCAGATGTGGAAATGCCAAATATACTGAGTCTGCAAGCATTACGTGCCATGAATCCTGGTGAGGCGATTGAGAAAACTTTGGGCTTCCACAGCACCGTCAACTCTGAACTTAGTGGTGATGAGAAGTGCCATATGGGATTATTACAAAACAATCTTCCAGGAGCTGATGCTGGTATGGGCCAAGTGCACAACGTGGACAATGGATCCAAAAATTATGGTACTGGAATCAGGATAAGGTCTCGCCAAGCACGGAATGACATGCCTAACAAAAGCCTCAATAGCCAAGGTGACGCACCCAGGAGAATCCGTCTGTTACGGAAACCTCAAGTGCACCCTCTTAGCTGCAATGAGGTCGGTGAAGGTGGGAGCTGCATAACAGAGGACCGTGATTCAAAGCCTATCATTGGGGGGGAGACAAAAGCTTCAGAAGATAACGCTGATGATGTGGATGCTGTGGATTCCCAAGTTGTAGACGAACCCCAGAAGACATCTCCGGAGTCAACTGACATTACAAAGGTTCCTGAGGAACATACTGCAACTGCGGGGTCCTTCTTGAAGTCAATAGACATCAAAAGCCTGTGCACGAGGACCCGTTACGCATCAAAAGCGTCCATCAAACTCGCAGTTTGGTCATCTGTTGTACTTTTTGTCATTGTATTGGTCCCAGTAGTAGTATTAGCTAAGAGAAAAAAGATGCTATGGAATGAACGAACCCAAAGATTTTCTGATGACATTGAAAGAGGTTCTTCACCAATGAAATATGCCGCGATGCCAAAGGACGAAGATGCGATATCATATCAATGTACCTAA 1899 0.4508 MGAAVECCPPRADEMAVLPLNSLPLGFRFRPTDEELVDYYLRQKINGNGGDVWVIREIDVCKWEPWDLPDLSVVRNRDPEWFFFCPQDRKYPNGHRLNRATAHGYWKATGKDRKIKSGSIVIGMKKTLVFYTGRAPRGKRTNWVMHEYRPTLKELDGTNPGQSAYVLCRLFKKQDETLEGPKCEGNDRTESTPTTANYSPEEIQSDVVPMAASSSLVTEDDKNRAVPFSTSENSEEATSNIITPVDCNSEECDTCDLQNKIVIPTTTEEDELLNLDIFYDPTTEPLDDKLFSPVHQHMPPEFCFPSSNEADNCGMQLQYGTNEIDMTEFLNSVVKWDELSYDSSCQMPTSTLVDAKDNGSGSDSDVEMPNILSLQALRAMNPGEAIEKTLGFHSTVNSELSGDEKCHMGLLQNNLPGADAGMGQVHNVDNGSKNYGTGIRIRSRQARNDMPNKSLNSQGDAPRRIRLLRKPQVHPLSCNEVGEGGSCITEDRDSKPIIGGETKASEDNADDVDAVDSQVVDEPQKTSPESTDITKVPEEHTATAGSFLKSIDIKSLCTRTRYASKASIKLAVWSSVVLFVIVLVPVVVLAKRKKMLWNERTQRFSDDIERGSSPMKYAAMPKDEDAISYQCT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00172 632 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Accr4g00172 632 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 232 - -
Accr4g00172 632 MobiDBLite consensus disorder prediction 215 237 - -
Accr4g00172 632 MobiDBLite consensus disorder prediction 441 460 - -
Accr4g00172 632 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Accr4g00172 632 MobiDBLite consensus disorder prediction 179 198 - -
Accr4g00172 632 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Accr4g00172 632 MobiDBLite consensus disorder prediction 484 512 - -
Accr4g00172 632 Coils Coil 629 632 - -
Accr4g00172 632 MobiDBLite consensus disorder prediction 486 510 - -
Accr4g00172 632 FunFam Nac domain-containing protein 86 32 176 - -
Accr4g00172 632 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00172 Accr-Chr4 1768592 1773150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00172 15 494 NAC Transcription Factor Family AT4G35580 40.816 1.30e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr4g00172 NAM 3.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00172 - - gmx:100778903 626.706