Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00171 ATGGCGGTTTTGCCGCCGAATTCTCTCCCTCTAGGCTTTAGGTTTCGTTCTACGGATGAGGAGCTGGTCAATCACTATTTGCGACAGAAGATCAACGGAAATGGGGGTGACGTATGGGTTATTCGAGAAATTGATGTTTGCAAATGGGACCCTTGGGATTTGCCCGATTTATCGGTTGTACGGAGCAAGGATCCAGAGTGGTTCTTCTTTTGTCCGCAGGATCGCAAATATCCAAATTGGCATCGATTCAACCGAGCAACGGCTCATGGGTACTGGAAGGCAACGGGCAAAGATCGCCAAATTAAGTCTGGTTCAATCGTGATTGGAATGAAGAAGACTTTAGTGTTCTATACTGGTCGTGCACCCAGAGGGGAGAGGACCAATTGGGTTATGCATGAGTACCGTCCTACACTAAAGGAGCTCGATGGTACCAATCCTGGACAGCGTGCATATGTCCTTTGTCGTTTATTTAAGAGGCAAGATAAGACTCTTGAAGGTTCAAACTGTGAGGCAAATGACCGGACTGAGTCAACTCCAACTACTGCTAATTACTCTCCAGAAGAAATACAATCAGGTGTTGTTCCGATGGCAGCTTCTTCGTCCTTAGTTACTGAAGATGATAAGAACAGAGCAGTTCCATTCTCTGCCCGAGAGAATTCTGAGGAAGCCACTGTAAGGGACCAGTCTCATATTAAGGTGGACTTGGATTATGAAGAGAGTGTTATTGGACTGATGACTTTGGGTTTAGGATAG 753 0.4595 MAVLPPNSLPLGFRFRSTDEELVNHYLRQKINGNGGDVWVIREIDVCKWDPWDLPDLSVVRSKDPEWFFFCPQDRKYPNWHRFNRATAHGYWKATGKDRQIKSGSIVIGMKKTLVFYTGRAPRGERTNWVMHEYRPTLKELDGTNPGQRAYVLCRLFKRQDKTLEGSNCEANDRTESTPTTANYSPEEIQSGVVPMAASSSLVTEDDKNRAVPFSARENSEEATVRDQSHIKVDLDYEESVIGLMTLGLG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00171 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 206 - -
Accr4g00171 250 FunFam Nac domain-containing protein 86 18 162 - -
Accr4g00171 250 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Accr4g00171 250 Coils Coil 249 250 - -
Accr4g00171 250 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Accr4g00171 250 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Accr4g00171 250 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00171 Accr-Chr4 1754282 1756052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00171 1 205 NAC Transcription Factor Family AT4G35580 64.563 1.20e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr4g00171 NAM 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00171 - - gmx:100170715 365.155