Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00107 ATGGTTTCCTCGCAATTATCTGCCTTTACTGAGACTTGTTTGCAGAAGCCTTCCCTGAAGCAATTGCTTATTCCAAGTGAATCCACTAATGTTTTGCCTTATGGTTATGACGAGGTCGATTTTTCTGATGTCTTTGGTCCGTCAAAAGAACTCAATTGTGAGAAAGCTAGAAACTTGGTGGATGCACCAAATCCAGATGAAAATATACACAAGAATCCTACTGTCATTCACAGCCGATCCCATTCTTTTGTGGGGCCCACATCCCGTATCAGTCAATCCTTGAACCTTACCAAAATCAGCTTACTTCATGAGAAGGAGGATGCACTGGAACTGGCGGAGGAGGCCTGTAGAGAAACACACACAGAATTTAAGGAAGAGAAGCCTAGCAAACAATTTAGTGATAACAATTTGAAACATAGAAGAGTTGGACTTGAAGATTTTGAAGTCCTGAAAGTTGTTGGGCAAGGTGCATATGGGAAGGTGTACCAGGTGAGGAGGGGAGGGACATCTGATATTTATGCAATGAAGGTAATGCAGAAGGACAAGATCATGCAGAAAAATCACTCTGAATATGTGATATCTGAGAGGGATATATTAACAGAAGTTTATCACCCTTTCATTGTGCGACTTAGATACTCATTCCAGACAAAGTATAAGTTGTACCTTGTGCTTGATTTCGTCAATGGCGGTCACCTTTTCTTTCACCTTTATCGCCAAGGCTTATTCAGGGAGGAGTTGGCTCGCTTTTATGCTGCAGAGATTGTTTCAGCTGTCTCTCATCTTCATGCAAATGGCATAACGCACAGGGATCTTAAACCTGAAAATATTCTTCTGGACGCACATGGCCATGTAGTTTTGACGGATTTTGGCCTAGCCAGGCAATTCTTTGAGAATGCAAGGTCAAATTCTATGTGTGGAACTTTAGAATATATGGCCCCTGAAATTATTTTGGGGAAAGGACATGACAAAGGAGCTGATTGGTGGAGCTTTGGAATTCTAATTTTTGAAATGATGACCGGGAAGCCTCCCTTTACCGGTGGAAATAGACAGCGAATCCAGCAAAAGATAATAAGGGACAAGGTCAAGCTCCCGGCGTTTTTGTCCAGTGAGGCCCATTCACTGTTAAAAGGGTTGTTGCAGAAAGAAGCCAGCAAACGCCTGGGCAATGGGCCAAGTGGTAGTGAGATGATTAAGAGCCACAAGTGGTTTAAGTCAATTAATTGGAAGAAATTAGAAGCTCGTGAACTTAGGCCTAGCTTTGTCCCAGAAGTTGCTGGGAATCATTGTGTTGCTAACTTTGATGATCGGTGGACTAATATGCCTTTGCTGGATTCTCCTGTTGTCACTCCCAAATTCAATGACAACCCCTTCAACGGGTTCGATTGGGTATTTTAG 1395 0.4265 MVSSQLSAFTETCLQKPSLKQLLIPSESTNVLPYGYDEVDFSDVFGPSKELNCEKARNLVDAPNPDENIHKNPTVIHSRSHSFVGPTSRISQSLNLTKISLLHEKEDALELAEEACRETHTEFKEEKPSKQFSDNNLKHRRVGLEDFEVLKVVGQGAYGKVYQVRRGGTSDIYAMKVMQKDKIMQKNHSEYVISERDILTEVYHPFIVRLRYSFQTKYKLYLVLDFVNGGHLFFHLYRQGLFREELARFYAAEIVSAVSHLHANGITHRDLKPENILLDAHGHVVLTDFGLARQFFENARSNSMCGTLEYMAPEIILGKGHDKGADWWSFGILIFEMMTGKPPFTGGNRQRIQQKIIRDKVKLPAFLSSEAHSLLKGLLQKEASKRLGNGPSGSEMIKSHKWFKSINWKKLEARELRPSFVPEVAGNHCVANFDDRWTNMPLLDSPVVTPKFNDNPFNGFDWVF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00107 464 FunFam Non-specific serine/threonine protein kinase 227 422 - -
Accr4g00107 464 Gene3D Phosphorylase Kinase; domain 1 144 443 - -
Accr4g00107 464 CDD STKc_AGC 153 403 IPR045270 GO:0004674|GO:0005524
Accr4g00107 464 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524
Accr4g00107 464 FunFam Non-specific serine/threonine protein kinase 144 248 - -
Accr4g00107 464 PANTHER RIBOSOMAL PROTEIN S6 KINASE 99 449 - -
Accr4g00107 464 Coils Coil 102 122 - -
Accr4g00107 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Accr4g00107 464 ProSiteProfiles Protein kinase domain profile. 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g00107 464 SUPERFAMILY Protein kinase-like (PK-like) 144 453 IPR011009 -
Accr4g00107 464 SMART serkin_6 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g00107 464 Pfam Protein kinase domain 147 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g00107 464 SMART pkinase_C_6 404 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
Accr4g00107 464 ProSiteProfiles AGC-kinase C-terminal domain profile. 404 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
Accr4g00107 464 Gene3D Transferase(Phosphotransferase) domain 1 227 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00107 Accr-Chr4 1222831 1224836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00107 1 463 AGC Kinase Gene Family AT3G08720 59.494 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Accr4g00107 Pkinase 6.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00107 K04688 - qsa:O6P43_020074 659.448