LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g00107	ATGGTTTCCTCGCAATTATCTGCCTTTACTGAGACTTGTTTGCAGAAGCCTTCCCTGAAGCAATTGCTTATTCCAAGTGAATCCACTAATGTTTTGCCTTATGGTTATGACGAGGTCGATTTTTCTGATGTCTTTGGTCCGTCAAAAGAACTCAATTGTGAGAAAGCTAGAAACTTGGTGGATGCACCAAATCCAGATGAAAATATACACAAGAATCCTACTGTCATTCACAGCCGATCCCATTCTTTTGTGGGGCCCACATCCCGTATCAGTCAATCCTTGAACCTTACCAAAATCAGCTTACTTCATGAGAAGGAGGATGCACTGGAACTGGCGGAGGAGGCCTGTAGAGAAACACACACAGAATTTAAGGAAGAGAAGCCTAGCAAACAATTTAGTGATAACAATTTGAAACATAGAAGAGTTGGACTTGAAGATTTTGAAGTCCTGAAAGTTGTTGGGCAAGGTGCATATGGGAAGGTGTACCAGGTGAGGAGGGGAGGGACATCTGATATTTATGCAATGAAGGTAATGCAGAAGGACAAGATCATGCAGAAAAATCACTCTGAATATGTGATATCTGAGAGGGATATATTAACAGAAGTTTATCACCCTTTCATTGTGCGACTTAGATACTCATTCCAGACAAAGTATAAGTTGTACCTTGTGCTTGATTTCGTCAATGGCGGTCACCTTTTCTTTCACCTTTATCGCCAAGGCTTATTCAGGGAGGAGTTGGCTCGCTTTTATGCTGCAGAGATTGTTTCAGCTGTCTCTCATCTTCATGCAAATGGCATAACGCACAGGGATCTTAAACCTGAAAATATTCTTCTGGACGCACATGGCCATGTAGTTTTGACGGATTTTGGCCTAGCCAGGCAATTCTTTGAGAATGCAAGGTCAAATTCTATGTGTGGAACTTTAGAATATATGGCCCCTGAAATTATTTTGGGGAAAGGACATGACAAAGGAGCTGATTGGTGGAGCTTTGGAATTCTAATTTTTGAAATGATGACCGGGAAGCCTCCCTTTACCGGTGGAAATAGACAGCGAATCCAGCAAAAGATAATAAGGGACAAGGTCAAGCTCCCGGCGTTTTTGTCCAGTGAGGCCCATTCACTGTTAAAAGGGTTGTTGCAGAAAGAAGCCAGCAAACGCCTGGGCAATGGGCCAAGTGGTAGTGAGATGATTAAGAGCCACAAGTGGTTTAAGTCAATTAATTGGAAGAAATTAGAAGCTCGTGAACTTAGGCCTAGCTTTGTCCCAGAAGTTGCTGGGAATCATTGTGTTGCTAACTTTGATGATCGGTGGACTAATATGCCTTTGCTGGATTCTCCTGTTGTCACTCCCAAATTCAATGACAACCCCTTCAACGGGTTCGATTGGGTATTTTAG	1395	0.4265	MVSSQLSAFTETCLQKPSLKQLLIPSESTNVLPYGYDEVDFSDVFGPSKELNCEKARNLVDAPNPDENIHKNPTVIHSRSHSFVGPTSRISQSLNLTKISLLHEKEDALELAEEACRETHTEFKEEKPSKQFSDNNLKHRRVGLEDFEVLKVVGQGAYGKVYQVRRGGTSDIYAMKVMQKDKIMQKNHSEYVISERDILTEVYHPFIVRLRYSFQTKYKLYLVLDFVNGGHLFFHLYRQGLFREELARFYAAEIVSAVSHLHANGITHRDLKPENILLDAHGHVVLTDFGLARQFFENARSNSMCGTLEYMAPEIILGKGHDKGADWWSFGILIFEMMTGKPPFTGGNRQRIQQKIIRDKVKLPAFLSSEAHSLLKGLLQKEASKRLGNGPSGSEMIKSHKWFKSINWKKLEARELRPSFVPEVAGNHCVANFDDRWTNMPLLDSPVVTPKFNDNPFNGFDWVF	464

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Accr4g00107	464	FunFam	Non-specific serine/threonine protein kinase	227	422	-	-
Accr4g00107	464	Gene3D	Phosphorylase Kinase; domain 1	144	443	-	-
Accr4g00107	464	CDD	STKc_AGC	153	403	IPR045270	GO:0004674\|GO:0005524
Accr4g00107	464	ProSitePatterns	Protein kinases ATP-binding region signature.	153	176	IPR017441	GO:0005524
Accr4g00107	464	FunFam	Non-specific serine/threonine protein kinase	144	248	-	-
Accr4g00107	464	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	99	449	-	-
Accr4g00107	464	Coils	Coil	102	122	-	-
Accr4g00107	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
Accr4g00107	464	ProSiteProfiles	Protein kinase domain profile.	147	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Accr4g00107	464	SUPERFAMILY	Protein kinase-like (PK-like)	144	453	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g00107	Accr-Chr4	1222831	1224836	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g00107	1	463	AGC Kinase Gene Family	AT3G08720	59.494	0.0	561

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Accr4g00107		Pkinase	6.4e-74	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g00107	K04688		-	qsa:O6P43_020074	659.448

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