Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00102 ATGGGTAGACGAAAACAAAGTAGGCCCCATCGATCTGGCGGGGCTATACTAGAAGCACAGGCAAGTGCTGGAGCAGAACTGGATAAACAGAAAATGCTAGAAACAGGGGGACAAGCAAAGGAGGATTTAGGTGAAGTTCACAATCCCTACTTTGTTGAAGTTGATAGGTCCAGCTGGTTATCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGCTGGCAGAAAGCTTTTCGGGTTTTGACCTTTCCGAGGAATTTTATGAGGATTTCCAATATTCTTTAAGATTTCAGCTGTTTAATGCCAATCATATTCTTGGTCGAATAAAACTAGGCCATTGGCCTGTAGTAGCTTATTCTGATATTCAACTAGAGTTTGTAAAAAGAGTAATGGATCATACAGAAACATGTACAGTGCTGTTATCTGGGGTTTTTGATGGTCCTGATGAAGGCGTATCAGGTCTTATTCACTTGGCAAGTTTGAAATTTATTACATTGAGGCCAGTTCTTGGGATTAGGTTTTGTGAAGACATGCTCTCCCTCAGATTAAGGGTTGAGGTACTAAAGAATGCTTTTGATGCATGTGAGTCACTTCTAGATGGTTCCAGACAATTATGGAAGAAGAGTATGATGAATGTCATATCCTGGTTACGTCCTGAAATTATGACGTCAGAGGTTAGATATGGGGTTGGTAGCAATATGAAAGTGGAAGTTGATCCACAGTCAGAGATTAGAGATGATACTCACCACACCCAGAGACATGTGAGGTTTGACCCTGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCAAGAAGTCATACCAGACCTACTTCCTGAATTGAGACCATATCAAAGACGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAAGAAGAGCTGGAGGTCAGGGGGAAGGAGAGAGAAGTCATTTTTATTCTCCTTTATGTGTGCCTGTGGATTTTATTGACACGAGTTCCAAAATGTACTTTAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGATTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCAGATGAGATGGGTTTGGGAAAAACTGTTGAACTTCTTGCTTGCATCTTTGCTCATCAGAGATCAGCATCTGAAAATGACATTCTTATTGACTCAGAGTTGCAAGTTAATGAGGATCGTAAAGTCAATTTTAAAAGACTCAAGAGAGATCGTGTGGAGTGTCCATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAGTGTGACATCTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCTCCCGAAGGAAAGTCACTGAAATCAAAACAGGGATCTGAAAGCAAGAAATTTAAAACCACCATAGCTGTAAGGGATGGGGAATATGTATGCCCAATATGCTTTGAACTAATACAAGCTACCGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCCCCTATTTTATCCCAGTGGCATGATGAAATTAGCCGTCATACAAATCCGGGTTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGAAACATCTTTCACCAACACATCTATGGTGAATATCAGTGAACTTGCCTCTGCAGACATTGTATTAACAACATATGATGTACTTAAAGAGGATTTGTCTCATGATTACGATAGGCATGAAGGTGATAGGCACTTTTTGAGATTTCAAAAAAGGTACCCAGTTGTTCCAACTCTTCTTACCAGAATATATTGGTGGAGAATTTGCCTGGATGAGGCTCAAATGGTGGAGAGCAATGCTGCCGCTGCCACTGAAATGGCACTACGGCTCAATGCAAAGTATCGTTGGTGCATTACAGGAACCCCCATTCAACGAAAGCTTGATGACTTGCATGGATTGTTACGATTCCTTAAAGCTAGCCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGAGAGATGTTGGAGCTATGGAATTTACACATAAAATCTTCAAACAAATCATGTGGCGCTCTTCAAAAGAACATGTTGCTAATGAGTTGCAGCTTCCTTCTCAGGAGGAGTGCCTTACGTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACATGAAACTTGTGTTAACTATGCTCATGAAATTATTGAGAGTTTGAGAAATGACATTCTTAAAATAAGTGTCCCAGGTTCTGTTTCTTCAGATGATTTTTCTGATTCTTTCATCACGCACACAGAGGCCGGGAAGCTGTTGAATGCTCTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGTTCTCTGCAACAGTCACCCATGACCATGGAGGAAATATTGATGGTCCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTCAGGGGGTCAGTTGTTGCTTTAAATGGACTTGCCGCTATAAGCATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTTGGCCGAAGAGCATTCTGAAGACTTCCGCCTGGATCCTTTGTTAAATATTCACATTCATCGTAACCTGGCTGAAATACTCCCTCAAACTACAAACATTTCCCTTAAGCTCCCTTGCAGAGGAAGGAAGTTATCTAAAACTGCACAACTTAAGTCAAAAAAGCATACTCTTGAGAAGGTTGATTATTGTGTTGCCAAGAAGAAGAAAGGGAATGACTCTGATGATATATATTTCAATATTGCTTCTGAAGAACTATCCAATGATACATCAAGCTTTTCGGAAAATGACTTAAATGGGCATCAGGAATTTGATGATGCGTCTATCAGTTCCTTACAGTTCTTGATGGCAGAATGTGAAGATTTGAAACATAAATATTTGTCTGTGTTCAGTTCAAAGCTATCTGCTGTCCAACAGGAGTTTCAAAAGGTGTATTTGCAGGTTTGCAATGCATACAGTGAGAGCAAAAATGATCCTACAATTTGGTGGTTAGAGGCTCTTCATCATTCTGAACAGAACAAGGATTTTTCTAATGAATTGCTTAGGAAGATTGAAGAAGCAATTGCGGGAACTTTAAACAATTCAAAGCCACCAAGAGTTACTACTCGTTTCCGGAGCATACACTCTCTGAAGTATCAAATCCAGACAGGTTTGGATCAATTAGAAGCTTCTAGGAAGGTTCTGCTTGATCGAATCTTAGAAATTGATCAGACTATGGACAAACCAAAGGATGAGGACATTGAACGTGTGGGTAAATGTCGAAATTGCCAACCTGATTCTGACGGTCCGCCGTGCATTTTGTGTGAACTTGATGAATTGTTTCAGGATTATGAAGCGAGGCTTTTTGTTCTAAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTGGATTTGCAGAAGAAAAATTCTGCACTTAATCGTTTCCTTTCAAAGCTATCACAATCTAATCATGTTGCAAAGACGTCTGATATTGGCTATGAAGAATCGAAAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCGGCATCTCAATTGGAAGTAATCCTTGGTGTGTTAAAGAATTATTGTAAAGCTCGGTTGGGAAGGGATAGTGTTTCAGTAGCTACCAAACATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGTCCATGCGAGGTCTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCCCGGTTACACCTCAAGGCAAATGAAAATGATAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGATAAGTTTATGTCTTTGGCCTCCTTGTCACAAATAAAAGGAAAACTTCGCTACTTAAAGGGTTTGGTACAATTGAAACAACAGCCATTGGGACATCCAGAAAGTTCTTCATCTACTCAGGAGGCGAGTGCAGTGTCAAATTTTACAGAAGAGAAATGCGTACCTGCATCTAAAGCTGATGAGGATTCATGCCCGGTTTGCCAACAAAAGCTGGGCAGTCAGAAAATGGTTTTCCAGTGTGGGCATGTTACATGTTGTAAATGTTTGTTTGCTATGACAGAGCAAAGGCTTCAAGATAGTAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGACAGCACACCGATTTTGGAAACATTGCATATGCTGTTGATAGACAGGATGAATCTTTCAAAACTTCTGTGCTGCAGAATGTTGACAGCAGTGAGAAATGTGAATCATCCATCAGTGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAATCACAAAAAGAATCTTGTGGATCAAGTCTTCAGACCCTAAAGCGAAAGTCCTTGTATTTTCTAGTTGGAACGATGTTCTTGATGTATTGGAGCACGCTTTTGCAGCCAATGATATCACCTACATTCGGATGAAAGGAGGCAGAAAATCACACGTTGCCATCAGTCAATTTAGAGGACAGCAGAATGACAAAAAAGGAACATCCCAGGAATCAACATCAAAATTCATTCAGGTTTTATTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAGGCTATCAGTCGGGTGCACCGAATTGGACAGAAAAATAAGACTCTCATTCATCGCTTCATTGTGAAAGACACAGTTGAAGAGAGCATATATAAGCTGAACAGAAGCAGGGCTAGCCATTCAGTTATCAGTGGTAACACAAAAAATCAAGACCAGTCTATGTTGACCCTGAAAGATGTTGAAACCTTGTTGGCAACAGCTCCATTAACGATACCAGAAAGTGATGAAAATCCCACTGCAAGTCTAAGGCACTTACCTCCTTCAATGGCCGCTGCTGTGGCTGCTGAGAAGAGACTCAATGAACAAAGGGCATGA 5004 0.4091 MGRRKQSRPHRSGGAILEAQASAGAELDKQKMLETGGQAKEDLGEVHNPYFVEVDRSSWLSNEHLDISEVVLTDLKLAESFSGFDLSEEFYEDFQYSLRFQLFNANHILGRIKLGHWPVVAYSDIQLEFVKRVMDHTETCTVLLSGVFDGPDEGVSGLIHLASLKFITLRPVLGIRFCEDMLSLRLRVEVLKNAFDACESLLDGSRQLWKKSMMNVISWLRPEIMTSEVRYGVGSNMKVEVDPQSEIRDDTHHTQRHVRFDPAGFYEAIRPSKSEPMLQEVIPDLLPELRPYQRRAAFWMVEREKRRAGGQGEGERSHFYSPLCVPVDFIDTSSKMYFNPFSGNISLCPEIHAPCVVGGILADEMGLGKTVELLACIFAHQRSASENDILIDSELQVNEDRKVNFKRLKRDRVECPCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPEGKSLKSKQGSESKKFKTTIAVRDGEYVCPICFELIQATESPIASGATLIVCPAPILSQWHDEISRHTNPGSLKTCVYEGVRETSFTNTSMVNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESNAAAATEMALRLNAKYRWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKRDVGAMEFTHKIFKQIMWRSSKEHVANELQLPSQEECLTWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILKISVPGSVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRGSVVALNGLAAISIMQKDFSQAALLYIEALTLAEEHSEDFRLDPLLNIHIHRNLAEILPQTTNISLKLPCRGRKLSKTAQLKSKKHTLEKVDYCVAKKKKGNDSDDIYFNIASEELSNDTSSFSENDLNGHQEFDDASISSLQFLMAECEDLKHKYLSVFSSKLSAVQQEFQKVYLQVCNAYSESKNDPTIWWLEALHHSEQNKDFSNELLRKIEEAIAGTLNNSKPPRVTTRFRSIHSLKYQIQTGLDQLEASRKVLLDRILEIDQTMDKPKDEDIERVGKCRNCQPDSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNSALNRFLSKLSQSNHVAKTSDIGYEESKKRNVGERVVVSRSASQLEVILGVLKNYCKARLGRDSVSVATKHLHIFEGMRKEFVHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCAASSNFSHDKFMSLASLSQIKGKLRYLKGLVQLKQQPLGHPESSSSTQEASAVSNFTEEKCVPASKADEDSCPVCQQKLGSQKMVFQCGHVTCCKCLFAMTEQRLQDSKFHKWVMCPTCRQHTDFGNIAYAVDRQDESFKTSVLQNVDSSEKCESSISVKGSYGTKIEAITKRILWIKSSDPKAKVLVFSSWNDVLDVLEHAFAANDITYIRMKGGRKSHVAISQFRGQQNDKKGTSQESTSKFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRASHSVISGNTKNQDQSMLTLKDVETLLATAPLTIPESDENPTASLRHLPPSMAAAVAAEKRLNEQRA 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00102 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1666 - -
Accr4g00102 1667 SMART ring_2 1355 1402 IPR001841 -
Accr4g00102 1667 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Accr4g00102 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 459 650 IPR014001 -
Accr4g00102 1667 CDD PHD_TCF19_like 416 481 - -
Accr4g00102 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1624 IPR001650 -
Accr4g00102 1667 Pfam Helicase conserved C-terminal domain 1449 1573 IPR001650 -
Accr4g00102 1667 CDD DEXQc_SHPRH 289 688 - -
Accr4g00102 1667 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Accr4g00102 1667 Gene3D - 482 709 IPR038718 -
Accr4g00102 1667 Gene3D - 353 417 IPR038718 -
Accr4g00102 1667 CDD SF2_C_SNF 1446 1584 - -
Accr4g00102 1667 SMART ultradead3 285 657 IPR014001 -
Accr4g00102 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1634 IPR027417 -
Accr4g00102 1667 Gene3D - 1416 1647 IPR027417 -
Accr4g00102 1667 SMART helicmild6 1480 1573 IPR001650 -
Accr4g00102 1667 SMART PHD_3 414 482 IPR001965 -
Accr4g00102 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 686 IPR027417 -
Accr4g00102 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1347 1415 IPR013083 -
Accr4g00102 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 481 IPR013083 -
Accr4g00102 1667 SUPERFAMILY RING/U-box 1346 1407 - -
Accr4g00102 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Accr4g00102 1667 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00102 Accr-Chr4 1168141 1182114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00102 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.104 3.61e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr4g00102 SNF2_N 5.7e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00102 K15710 - gmx:100776659 2579.28