Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00101 ATGGAGAAGGAATTGGTCGAGTTATATGAAGCCGTAAAGAAAGCGGCTGATGTGGCGAGTTCAACCGATAGCGAAGTTGAAGAAAGCCGATGTGTTGATGCCTTCAAGCAGCTGAAGAAATTTCCCGTCAATTATCAAATTCTTGTGTCCACCCAGGTGGGCAAACACCTAAAAGTTCTAACAAAGCATCCAAGAAAGAAAATCCGGGCTTTTGCTATTGACCTGATTGAGATATGGAAGGACATTATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTCACAAAATAATGTTCAGTTGGCAAATGGGGAGAAAGCTAAAGTTGAGAAGGATCAGAAGACTCATTCGGTAAAGGTTGAGAAGGTTTCAAAACCTGACATTGTCAAGGTTGAGAAAACTGATAGGAATGGGACACCAAGCTCTGAATATGGGAAGGAACTCGTTTCTGCTGTCAGAAGTGAGAAACCTGTTTCTCCAGCTAATGTTAAGGTAGAAAAAATAGCCAGGGATGAGAAGCCAGCTTCTGGAGTGAAGAAGGCATCCTCAAGCCCTGCTGCTCCACCAAAGCTGAAAGCTATGATTAAATCTAATGATGCGATGCGAGACAAAATAAGGGAAATTCTCCAAGAGGCCTTCTCTAAGGTTTCTGGAGAGGCTGATGAAACACTCATGGATCAAGTTAATGCTTGTGACCCTATTCGGGTTGCTGTTACAGTGGAATCTGTACTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTACAGGTCCTTGATGTTTAATCTCAAGGATCCAAACAACCCAGATTTTAGGAGAAGAGTTCTGCTTGGAGAATGTGCGCCAGAAAGACTCATCAACATGAACGCACTAGACATGGCTAGCGATCAAAGGAAGAATGAGAACGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAACAGGCAAAAGCCACGACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGGAGTGCTGATGAACCTATGACAACTTATGTCACGTGCGTTGCATGCAATAACCGTTGGAAATTCTGTTAG 1110 0.4288 MEKELVELYEAVKKAADVASSTDSEVEESRCVDAFKQLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFAIDLIEIWKDIIIKETSKNKNGSSQNNVQLANGEKAKVEKDQKTHSVKVEKVSKPDIVKVEKTDRNGTPSSEYGKELVSAVRSEKPVSPANVKVEKIARDEKPASGVKKASSSPAAPPKLKAMIKSNDAMRDKIREILQEAFSKVSGEADETLMDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGECAPERLINMNALDMASDQRKNENEKLKQKALFECERGQQAKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVACNNRWKFC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00101 369 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 369 - -
Accr4g00101 369 PIRSF TFIIS 2 369 IPR035100 -
Accr4g00101 369 CDD Zn-ribbon_TFIIS 323 368 - -
Accr4g00101 369 MobiDBLite consensus disorder prediction 89 103 - -
Accr4g00101 369 SMART mid_6 203 307 IPR003618 GO:0006351
Accr4g00101 369 NCBIfam transcription elongation factor S-II 14 369 IPR006289 GO:0003676|GO:0005634|GO:0006368
Accr4g00101 369 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 98 IPR035441 -
Accr4g00101 369 Coils Coil 191 211 - -
Accr4g00101 369 Pfam Transcription factor S-II (TFIIS), central domain 198 315 IPR003618 GO:0006351
Accr4g00101 369 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Accr4g00101 369 Gene3D - 180 297 IPR036575 GO:0006351
Accr4g00101 369 Pfam Transcription factor S-II (TFIIS) 329 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr4g00101 369 SUPERFAMILY Zinc beta-ribbon 309 367 - -
Accr4g00101 369 ProSiteProfiles TFIIS central domain profile. 201 324 IPR003618 GO:0006351
Accr4g00101 369 ProSiteProfiles Zinc finger TFIIS-type profile. 327 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr4g00101 369 CDD TFIIS_I 9 83 - -
Accr4g00101 369 SMART TFS2_5 8 85 IPR003617 GO:0005634
Accr4g00101 369 Gene3D - 298 369 - -
Accr4g00101 369 FunFam Probable Transcription elongation factor S-II 298 369 - -
Accr4g00101 369 Pfam TFIIS helical bundle-like domain 36 83 IPR017923 -
Accr4g00101 369 Coils Coil 291 311 - -
Accr4g00101 369 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 99 IPR035441 -
Accr4g00101 369 SMART Cys4_2 329 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr4g00101 369 MobiDBLite consensus disorder prediction 89 118 - -
Accr4g00101 369 ProSitePatterns Zinc finger TFIIS-type signature. 331 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Accr4g00101 369 SUPERFAMILY Elongation factor TFIIS domain 2 187 299 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00101 Accr-Chr4 1163885 1166139 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Accr4g00101 TFIIS_M 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00101 K03145 - qsa:O6P43_014856 521.161