Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00090 ATGGGTGCTTATGATCAAGGTTCTAACATCACTTCTTTGCCATTGGATTCTCCTAGGAAGAGGAAAAGTCGTAGTAGGCGTGATCAAGATTCTAACATCACTTCTTTGCCGTTGGATTCTTCTAGGAAGAGGAAAAGTCGTAGTAGGCGGGATGGTTCTAAGTCTGTGGCTGAGACTCTGGCAAAGTGGAAAGAATATAATGAGCATCTCGAATCTAGCAAAGGTGGGGGCAAACCAACTCGCAGAGCCCCGGCCAAAGGTTCAAAGAAAGGGTGTATGAAGGGTAAAGGAGGGCCTGATAACTCAATATGTAATTACAGGGGCGTTAGACAAAGAACCTGGGGAAAATGGGTTGCTGAGATTAGGGAACCAAACAGAGGAAGTAGGTTGTGGTTGGGTACATTCGCTACTGCGTATGAAGCTGCACTTGCTTATGATGAAGCTGCTAGAGCCATGTATGGTCCCTGTGCCCGCCTCAATTTTCCCAACATATCGGATTATACTTCTTGCAAGGAATCCCTCAAGGTCTCTTCACCGGCTCCAACCTTTTCAAGTTCTTCAGTGGCAACCCTTGCTGGTTCGGACACAACAAGCATATCAAATCATTCTGAGGTCTGCGCAGCTGAGGATGTTAAGACTAGACATCAACCTACCAAAATTGATGATATGGATAATATTCATCTTGAAGCTGATGAAGTTGCCTCTGCAAATATCAAAGTGAAGTCGGAGCCAAAGGATGAGCCTGTTGATCTCACAGATTACGGGTGCAGGGGCTTTGAAATTGTGCAACCAGAAGAATACGGGATTAAAAAGGATGAAAGTAAAGATCAAATGGACTATTCTTGGCTTGAGGGTGATGATTTGGAAGGTGATTGCTTGCAGAATTTCTCTATGGATGAGATGTTTGATGTGGATGAACTTTTGGGGGCGATGGACAAGAATCCAATTGATGACTATGAAACATTCGGTTATGGTCAAATGGGCGACGCTGGAGATGGAAACCTTGAGAGTGAAGTGCCATCAAGCTTTTCCTATGAACTGCAAAACCCAGATGCCAAGCTGCTGGGAAGTCTGCCCCACATGGAACAGACGCCATCAGATGTTGATTATGGATTTGATTTTTTGAAAATAGAGGAGCCAGAGAACAACAATGGTGGAGGGGATGAACGGCAATTTCTCGATTTTGGATTGCCAGATCTGTGA 1203 0.4472 MGAYDQGSNITSLPLDSPRKRKSRSRRDQDSNITSLPLDSSRKRKSRSRRDGSKSVAETLAKWKEYNEHLESSKGGGKPTRRAPAKGSKKGCMKGKGGPDNSICNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFATAYEAALAYDEAARAMYGPCARLNFPNISDYTSCKESLKVSSPAPTFSSSSVATLAGSDTTSISNHSEVCAAEDVKTRHQPTKIDDMDNIHLEADEVASANIKVKSEPKDEPVDLTDYGCRGFEIVQPEEYGIKKDESKDQMDYSWLEGDDLEGDCLQNFSMDEMFDVDELLGAMDKNPIDDYETFGYGQMGDAGDGNLESEVPSSFSYELQNPDAKLLGSLPHMEQTPSDVDYGFDFLKIEEPENNNGGGDERQFLDFGLPDL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00090 400 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 MobiDBLite consensus disorder prediction 1 101 - -
Accr4g00090 400 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 41 371 - -
Accr4g00090 400 MobiDBLite consensus disorder prediction 379 400 - -
Accr4g00090 400 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Accr4g00090 400 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Accr4g00090 400 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 MobiDBLite consensus disorder prediction 1 16 - -
Accr4g00090 400 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Accr4g00090 400 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Accr4g00090 400 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00090 Accr-Chr4 1063155 1064357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00090 31 400 AP2-EREBP Transcription Factor Family AT2G40340 40.741 9.01e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr4g00090 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00090 - K09286 pcin:129294142 602.438