Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00084 ATGGGTGGGAATTCGCCTTGCGCTTCATGCAAATTGCTCAGACGCCGATGCGCCAGAGACTGCATTTTCGCTCCCTATTTCCCTTCCGATGATCCCCAAAAGTTCGCCATCGTCCACAAGGTTTTTGGCTCCAGCAACGTAAGCAAAATGTTACAGGAACTTCCGGTGCAGCAGAGAGCTGATGCTGTGAGCAGTCTAGTGTATGAAGCTAATGCAAGAGTGACAGACCCGGTTTATGGTTGTGTTGGGGCCATATCCTACCTGCAAAGCCAGGTCTCAGAGCTTCAAATGCAGCTCGCGGTGGCTCAGGCAGAGATACTCTGCATCCAGATGCAGAACGTCCCGGTGGTGCTGCCGGCAAACTCAGAAATGCATGACCTTCCAAACTATCTCAATTTCACTTCTTCCGGCAATGTAATTCATCGCGACCACTCTCAAAAGAGAGAGAACATCTTTGGACATGACTTGGTTTCTTGA 477 0.499 MGGNSPCASCKLLRRRCARDCIFAPYFPSDDPQKFAIVHKVFGSSNVSKMLQELPVQQRADAVSSLVYEANARVTDPVYGCVGAISYLQSQVSELQMQLAVAQAEILCIQMQNVPVVLPANSEMHDLPNYLNFTSSGNVIHRDHSQKRENIFGHDLVS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00084 158 Coils Coil 85 105 - -
Accr4g00084 158 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Accr4g00084 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 127 - -
Accr4g00084 158 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00084 Accr-Chr4 1028269 1028846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00084 3 117 AS2 family AT2G30130 87.826 3.98e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr4g00084 LOB 7.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00084 - - lang:109360574 256.914