Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00078 ATGGACGAATCATCTCTGCCGGCAACTATGATCTTCTCAGGTTTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCTAATGAAGTTGCTTCCATGGAAAAATTCCCTTTTGTTCAATTCAGGAATGTCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTGTTCGAGGAGATTCAGGAAGCAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAAGAAAGCAGCTCACTCTGGAGTCTCATACAGTTAGAGTTTATTTCCAATCAATTCTATGTGCTTGTAAAGGAGATGGGAAGCGCTTTAGATATTCTTCCTCTGAGCTTGCTCAACATCACAGCAGATACAAGAGAACAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTTGTTCATTGATCCTCGTGAGCTGCAACGAAGAGAGCAGCTTCTGCATGTAATGGCCCATGACACACTACAGAACAAGAAGAACAAGGGATTTCCTGAATTTGGGAAAGTACAACAAATATTATGCAGCATTGGTTTGAGAACCCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGACTGAAGCTCAGAATCAGGCCGGTACAGGGGGCTTAATCGTTATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCCAAATCCATGATATTCAGAGACGGTGAAAACGAGACAGATGAAGACTGTAAGCCAACAGGGTCCGCATTCATATATAAGAGCTCTGATAATTCTTTTTCTTCACCTTCTTCTCAGATGACACCGTCAGCACCTAATGTTCCTGACGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGACATACTTATGATCGAATTTCAATTGCACAGTGGATAAACTCGGGACATCACACTTGCCCAAAAAGTGGGCAAAGATTAATTCACACTGCTCTCATACCCAACTATGCATTGAAGAGTCTTGTGCAGCAATGGTGCTGTGAGAATAACGTCTCAGTGAATGAGCCGACATCATCTTCTTCTTCTTCAACTTCGGAAAATCCCAACAGCAAGGACAACTCAAATGAAAAGGCTGGCGACCATATCTCTGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTGGGAAAATTGGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTAAGATTGCTAGCAAAAACTGGGATGGACAATCGAAGAATTATCGCCGAGGCAGGGGCAATTCCATTTCTGCTGATATTACTAGGATCACATGATGCAAGAATCCAGGAACATGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGATAATAACAAGGTTTTGATAGTGGCTGCTGGAGCAGTGGATCACATAGTAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGTTTGACTGTAGTTGATGACTGCAAGGTAGAAATTGGAGCTCGTCCAAGGGCCATACCCGCATTGGTAGGACTACTAAGAGAGGGCACTCCTATTGGGAAAAGAGATGCTGCTACTGCCATTTTCAACCTTGCAGTTTATAATCCTAACAAGGCCAAAATCGTTAATGCTGGTGCTGTTCCTTTGCTTGTCGAGTTGCTTATGGATGATAAGGCTGGGATCACAGATGATTCTTTGGCTGTGCTTGCTTTGCTTCTGGGTTGCTCTGAAGGTTTGGAGAAGATCAGGAATAGTAAAGAGTTGGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGATCAGCCAAAGGGAAGGAGAATTCTATAACACTTTTGTTGGGGTTGTGCAAGGAGGAAGGTGAAGTGGTGGCAAGGAGACTATTGGCAAATCCTCGAAGCATTCCCTCTCTTCAAAGCTTGGCTGCGGACGGTTCTTTAAGAGCACGGAGGAAGGCCGATGCCTTGCTTAGACTGGTCAATAGGTGCTGCTCTCAGCCTCATCATTCTCTTTGA 2085 0.4345 MDESSLPATMIFSGFLPTGSLLDSLVHISNEVASMEKFPFVQFRNVSSMIRRVKLLSSLFEEIQEADSPLPPSSILCFTELFSVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYVLVKEMGSALDILPLSLLNITADTREQVELLHKQAKAVELFIDPRELQRREQLLHVMAHDTLQNKKNKGFPEFGKVQQILCSIGLRTPSDYDREISKLETEAQNQAGTGGLIVMSNIHNLISLVTYSKSMIFRDGENETDEDCKPTGSAFIYKSSDNSFSSPSSQMTPSAPNVPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCCENNVSVNEPTSSSSSSTSENPNSKDNSNEKAGDHISAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLLILLGSHDARIQEHAVTALFNLSIFDNNKVLIVAAGAVDHIVEVLESGKTMEARENAAAAIFSLTVVDDCKVEIGARPRAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLVELLMDDKAGITDDSLAVLALLLGCSEGLEKIRNSKELVPLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLVNRCCSQPHHSL 694
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00078 694 FunFam RING-type E3 ubiquitin transferase 287 361 - -
Accr4g00078 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 571 IPR000225 GO:0005515
Accr4g00078 694 Gene3D - 527 685 IPR011989 -
Accr4g00078 694 PANTHER U BOX DOMAIN-CONTAINING 45 686 - -
Accr4g00078 694 Pfam U-box domain 288 359 IPR003613 GO:0004842|GO:0016567
Accr4g00078 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Accr4g00078 694 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Accr4g00078 694 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Accr4g00078 694 SMART arm_5 518 558 IPR000225 GO:0005515
Accr4g00078 694 SMART arm_5 475 516 IPR000225 GO:0005515
Accr4g00078 694 SMART arm_5 434 474 IPR000225 GO:0005515
Accr4g00078 694 SMART arm_5 559 599 IPR000225 GO:0005515
Accr4g00078 694 SMART arm_5 389 432 IPR000225 GO:0005515
Accr4g00078 694 SMART arm_5 600 641 IPR000225 GO:0005515
Accr4g00078 694 FunFam RING-type E3 ubiquitin transferase 500 687 - -
Accr4g00078 694 MobiDBLite consensus disorder prediction 362 389 - -
Accr4g00078 694 Pfam Armadillo/beta-catenin-like repeat 436 473 IPR000225 GO:0005515
Accr4g00078 694 Pfam Armadillo/beta-catenin-like repeat 560 595 IPR000225 GO:0005515
Accr4g00078 694 SUPERFAMILY RING/U-box 278 362 - -
Accr4g00078 694 Gene3D - 380 526 IPR011989 -
Accr4g00078 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Accr4g00078 694 MobiDBLite consensus disorder prediction 362 381 - -
Accr4g00078 694 SUPERFAMILY ARM repeat 406 681 IPR016024 -
Accr4g00078 694 Gene3D - 41 133 IPR036537 GO:0007166
Accr4g00078 694 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr4g00078 Accr-Chr4 975454 977538 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00078 19 689 U-box Gene Family AT3G46510 37.371 5.94e-128 392
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00078 - - gmx:100793498 1054.28