Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr4g00078 | ATGGACGAATCATCTCTGCCGGCAACTATGATCTTCTCAGGTTTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCTAATGAAGTTGCTTCCATGGAAAAATTCCCTTTTGTTCAATTCAGGAATGTCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTGTTCGAGGAGATTCAGGAAGCAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAAGAAAGCAGCTCACTCTGGAGTCTCATACAGTTAGAGTTTATTTCCAATCAATTCTATGTGCTTGTAAAGGAGATGGGAAGCGCTTTAGATATTCTTCCTCTGAGCTTGCTCAACATCACAGCAGATACAAGAGAACAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTTGTTCATTGATCCTCGTGAGCTGCAACGAAGAGAGCAGCTTCTGCATGTAATGGCCCATGACACACTACAGAACAAGAAGAACAAGGGATTTCCTGAATTTGGGAAAGTACAACAAATATTATGCAGCATTGGTTTGAGAACCCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGACTGAAGCTCAGAATCAGGCCGGTACAGGGGGCTTAATCGTTATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCCAAATCCATGATATTCAGAGACGGTGAAAACGAGACAGATGAAGACTGTAAGCCAACAGGGTCCGCATTCATATATAAGAGCTCTGATAATTCTTTTTCTTCACCTTCTTCTCAGATGACACCGTCAGCACCTAATGTTCCTGACGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGACATACTTATGATCGAATTTCAATTGCACAGTGGATAAACTCGGGACATCACACTTGCCCAAAAAGTGGGCAAAGATTAATTCACACTGCTCTCATACCCAACTATGCATTGAAGAGTCTTGTGCAGCAATGGTGCTGTGAGAATAACGTCTCAGTGAATGAGCCGACATCATCTTCTTCTTCTTCAACTTCGGAAAATCCCAACAGCAAGGACAACTCAAATGAAAAGGCTGGCGACCATATCTCTGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTGGGAAAATTGGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTAAGATTGCTAGCAAAAACTGGGATGGACAATCGAAGAATTATCGCCGAGGCAGGGGCAATTCCATTTCTGCTGATATTACTAGGATCACATGATGCAAGAATCCAGGAACATGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGATAATAACAAGGTTTTGATAGTGGCTGCTGGAGCAGTGGATCACATAGTAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGTTTGACTGTAGTTGATGACTGCAAGGTAGAAATTGGAGCTCGTCCAAGGGCCATACCCGCATTGGTAGGACTACTAAGAGAGGGCACTCCTATTGGGAAAAGAGATGCTGCTACTGCCATTTTCAACCTTGCAGTTTATAATCCTAACAAGGCCAAAATCGTTAATGCTGGTGCTGTTCCTTTGCTTGTCGAGTTGCTTATGGATGATAAGGCTGGGATCACAGATGATTCTTTGGCTGTGCTTGCTTTGCTTCTGGGTTGCTCTGAAGGTTTGGAGAAGATCAGGAATAGTAAAGAGTTGGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGATCAGCCAAAGGGAAGGAGAATTCTATAACACTTTTGTTGGGGTTGTGCAAGGAGGAAGGTGAAGTGGTGGCAAGGAGACTATTGGCAAATCCTCGAAGCATTCCCTCTCTTCAAAGCTTGGCTGCGGACGGTTCTTTAAGAGCACGGAGGAAGGCCGATGCCTTGCTTAGACTGGTCAATAGGTGCTGCTCTCAGCCTCATCATTCTCTTTGA | 2085 | 0.4345 | MDESSLPATMIFSGFLPTGSLLDSLVHISNEVASMEKFPFVQFRNVSSMIRRVKLLSSLFEEIQEADSPLPPSSILCFTELFSVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYVLVKEMGSALDILPLSLLNITADTREQVELLHKQAKAVELFIDPRELQRREQLLHVMAHDTLQNKKNKGFPEFGKVQQILCSIGLRTPSDYDREISKLETEAQNQAGTGGLIVMSNIHNLISLVTYSKSMIFRDGENETDEDCKPTGSAFIYKSSDNSFSSPSSQMTPSAPNVPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCCENNVSVNEPTSSSSSSTSENPNSKDNSNEKAGDHISAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLLILLGSHDARIQEHAVTALFNLSIFDNNKVLIVAAGAVDHIVEVLESGKTMEARENAAAAIFSLTVVDDCKVEIGARPRAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLVELLMDDKAGITDDSLAVLALLLGCSEGLEKIRNSKELVPLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLVNRCCSQPHHSL | 694 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr4g00078 | 694 | FunFam | RING-type E3 ubiquitin transferase | 287 | 361 | - | - | |
Accr4g00078 | 694 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 529 | 571 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | Gene3D | - | 527 | 685 | IPR011989 | - | |
Accr4g00078 | 694 | PANTHER | U BOX DOMAIN-CONTAINING | 45 | 686 | - | - | |
Accr4g00078 | 694 | Pfam | U-box domain | 288 | 359 | IPR003613 | GO:0004842|GO:0016567 | |
Accr4g00078 | 694 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 363 | IPR013083 | - | |
Accr4g00078 | 694 | ProSiteProfiles | U-box domain profile. | 287 | 361 | IPR003613 | GO:0004842|GO:0016567 | |
Accr4g00078 | 694 | SMART | Ubox_2 | 291 | 354 | IPR003613 | GO:0004842|GO:0016567 | |
Accr4g00078 | 694 | SMART | arm_5 | 518 | 558 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SMART | arm_5 | 475 | 516 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SMART | arm_5 | 434 | 474 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SMART | arm_5 | 559 | 599 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SMART | arm_5 | 389 | 432 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SMART | arm_5 | 600 | 641 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | FunFam | RING-type E3 ubiquitin transferase | 500 | 687 | - | - | |
Accr4g00078 | 694 | MobiDBLite | consensus disorder prediction | 362 | 389 | - | - | |
Accr4g00078 | 694 | Pfam | Armadillo/beta-catenin-like repeat | 436 | 473 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | Pfam | Armadillo/beta-catenin-like repeat | 560 | 595 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | SUPERFAMILY | RING/U-box | 278 | 362 | - | - | |
Accr4g00078 | 694 | Gene3D | - | 380 | 526 | IPR011989 | - | |
Accr4g00078 | 694 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 445 | 487 | IPR000225 | GO:0005515 | |
Accr4g00078 | 694 | MobiDBLite | consensus disorder prediction | 362 | 381 | - | - | |
Accr4g00078 | 694 | SUPERFAMILY | ARM repeat | 406 | 681 | IPR016024 | - | |
Accr4g00078 | 694 | Gene3D | - | 41 | 133 | IPR036537 | GO:0007166 | |
Accr4g00078 | 694 | CDD | RING-Ubox_PUB | 289 | 341 | IPR045210 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr4g00078 | Accr-Chr4 | 975454 | 977538 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr4g00078 | 19 | 689 | U-box Gene Family | AT3G46510 | 37.371 | 5.94e-128 | 392 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr4g00078 | - | - | gmx:100793498 | 1054.28 |