Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00076 ATGGACGACCACCTTTCTTCCACCGTCACCACCGTTGCCACCGCCACTCCCTGCCCTACATCTCCTAATAACACCAAAACTGACTCTGCTCGCAAATCCAAAGGCAAAGGTGGTCCCGACAACAACAAATTTAGGTACCGTGGTGTCAGGCAGCGAAGCTGGGGCAAATGGGTCGCTGAGATCAGAGAGCCTCGCAAGCGAACCCGAAAGTGGCTCGGCACCTTCGCCACCGCCGAGGACGCCGCTCGAGCCTACGACCGCGCCGCCATCATCCTCTACGGCTCTAGGGCTCAGCTCAATTTACAACCCTCCGCCGCCTCTTCTTCCCACTCTTTTTCCTCATCTCGCGCCTCTGCCCCTTCTTCCTCTTCTCAAACCCTTCGTCCCTTGCTTCCCCGCCCATCTGCCCTTAGCGTCGCCTTATCCTCTGCCGCCACATCGGGTTTCTTGCCCTACGGGGTTTACCCCAATAATACTAATAATACTGATTATATCCCGCAAATGATGTGTCCGGTGAATAATAATATGGTGCAACAGCATCGTCAAGTGGTGCAACTTCCCCAGAAAACGTATCAGCCCCCAGAATCCGATGGAAATATGGCCGGCAGCTCCAACACAGCAACCTCGTACAAGGATCAGCTGCTGCCCCAACAACCGTCGAATCAACTGCAGCATCAGAATTATTGCATGCACAATGATTTTAGTTCTCTGGTGAGTTCGGTTGGGTCAAGTTTGTATGCCTCGCAGACACAGACAGTAGTTGCACCTGCGGATCTGTGGCCGTTGACGAATGAGGAAGACTACCCACCAAGTCTATGGGACTGCTATAACGACCCTTTCCTCTTTGATTTTTAA 855 0.5298 MDDHLSSTVTTVATATPCPTSPNNTKTDSARKSKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSAASSSHSFSSSRASAPSSSSQTLRPLLPRPSALSVALSSAATSGFLPYGVYPNNTNNTDYIPQMMCPVNNNMVQQHRQVVQLPQKTYQPPESDGNMAGSSNTATSYKDQLLPQQPSNQLQHQNYCMHNDFSSLVSSVGSSLYASQTQTVVAPADLWPLTNEEDYPPSLWDCYNDPFLFDF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00076 284 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 FunFam Ethylene-responsive transcription factor 2 45 103 - -
Accr4g00076 284 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 Pfam AP2 domain 45 93 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 MobiDBLite consensus disorder prediction 1 46 - -
Accr4g00076 284 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Accr4g00076 284 MobiDBLite consensus disorder prediction 106 129 - -
Accr4g00076 284 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Accr4g00076 284 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Accr4g00076 284 MobiDBLite consensus disorder prediction 1 28 - -
Accr4g00076 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 240 - -
Accr4g00076 284 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00076 Accr-Chr4 958727 959581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00076 31 284 AP2-EREBP Transcription Factor Family AT2G40220 44.898 2.77e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr4g00076 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00076 K09286 - qsa:O6P43_020181 223.016